Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.012 30 5.1 3.8 12 44 14 43 6 43 0.80

2 10 0.044 1.1e+02 3.2 6.2 17 43 48 76 46 77 0.95

3 10 0.0017 4.4 7.7 1.6 18 39 78 100 77 102 0.77

4 10 2.1e-05 0.054 13.9 2.9 13 43 101 128 94 129 0.85

5 10 0.5 1.3e+03 -0.1 1.7 15 39 132 153 130 156 0.67

6 10 0.13 3.4e+02 1.7 2.5 3 25 149 174 147 189 0.86

7 10 0.00012 0.29 11.5 0.6 13 40 191 215 179 218 0.84

8 10 0.042 1.1e+02 3.3 0.9 18 37 224 240 219 246 0.76

9 10 0.005 13 6.3 3.1 18 40 252 271 241 274 0.83

10 10 4.7e-05 0.12 12.8 2.2 15 44 277 303 269 303 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.012	30	5.1	3.8	12	44	14	43	6	43	0.80
2	10	0.044	1.1e+02	3.2	6.2	17	43	48	76	46	77	0.95
3	10	0.0017	4.4	7.7	1.6	18	39	78	100	77	102	0.77
4	10	2.1e-05	0.054	13.9	2.9	13	43	101	128	94	129	0.85
5	10	0.5	1.3e+03	-0.1	1.7	15	39	132	153	130	156	0.67
6	10	0.13	3.4e+02	1.7	2.5	3	25	149	174	147	189	0.86
7	10	0.00012	0.29	11.5	0.6	13	40	191	215	179	218	0.84
8	10	0.042	1.1e+02	3.3	0.9	18	37	224	240	219	246	0.76
9	10	0.005	13	6.3	3.1	18	40	252	271	241	274	0.83
10	10	4.7e-05	0.12	12.8	2.2	15	44	277	303	269	303	0.87

Coding Sequence: atgttttttttcattttcaggaTCCATCCCGAGAGTAAACTGACCACCCATCGATTGCAATGCGACTATTGTAACCAgtatttcgaaaaggaatacAAACTCACGTACCATTTAAAAACCAAACACAAGAACGCACCTCTTTGGTCTTGCAAAGTGTGCGGGAAACATTTTCGAACACGTCTGAAACTGCAAACGCACGAATCGAGTCACCACATCAAAAGTGAACACTTCCAGTGCGACATATGCAAGAAAACGTTGAAATCTAAACAAGCTTTGTCGAGACATACCAGACGGCACTTGCAATTGTACACCATCAAATGCAATTACTGCGGCAAGGGTTTTTTCGGAGCCTCTAGTTTGAAATTACATTTGAACTCACGTCATACCGGTAAGAACAGATTTGTTTGTGATATTTGTAACCGGCCTTGCTACGATAAGACCTCCTTGAAGAACCACATGATAAAGCACTCTGCGGATTACAAGATCAAGACGAAAGTGAAATGCGACGAGTGCGACCAAGAATTCCTGGACGAGAAGTATCTGAAAATACACCAAAACAAGAAACACGTGTCTGATAACCGGTTCGTTTGTGACCTGTGTGGCAAAAAGTTGTACTCGAAGAGTGGTCTTAAAGACCACATGAACATTCACGAAGGTTTGAAACCATACAAGTGTGATCATTGCGGGACGGGTTTCGCTAATTCTACGACGTTAAGGCTTCACTCAAGACGTCATACAGGAGAGCGACCTTATCGGTGTAATCTTTGCGAGAAATCATTCACGCAGAGTCACAGTCTTAAGGTGCACTTGAGGCTACACACCGGCGAGAAGCCTTATACATGTAATATATGCAGCAAAGGATTTGTCAGCACTAGTGTCTTAAAATCACACATGAAGGGTAACCATAAACTCAACTAA
Protein Sequence: MFFFIFRIHPESKLTTHRLQCDYCNQYFEKEYKLTYHLKTKHKNAPLWSCKVCGKHFRTRLKLQTHESSHHIKSEHFQCDICKKTLKSKQALSRHTRRHLQLYTIKCNYCGKGFFGASSLKLHLNSRHTGKNRFVCDICNRPCYDKTSLKNHMIKHSADYKIKTKVKCDECDQEFLDEKYLKIHQNKKHVSDNRFVCDLCGKKLYSKSGLKDHMNIHEGLKPYKCDHCGTGFANSTTLRLHSRRHTGERPYRCNLCEKSFTQSHSLKVHLRLHTGEKPYTCNICSKGFVSTSVLKSHMKGNHKLN

Sequence clustering based on sequence similarity using MMseqs2