Rfer015061.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- gl
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000374.1:433912-442496[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.8e-06 0.0045 17.3 0.1 15 41 262 285 254 287 0.85 2 5 0.056 1.4e+02 2.9 0.3 18 41 293 313 288 315 0.83 3 5 0.012 29 5.1 0.9 6 38 310 342 306 342 0.79 4 5 6.2e-05 0.16 12.4 0.7 18 40 349 368 345 371 0.89 5 5 0.15 3.8e+02 1.6 1.4 18 40 377 396 369 402 0.80
Sequence Information
- Coding Sequence
- ATGGATACCAGTTACGTGCCCAACAATCCCCAgttcggtctccagttcgagtGCAACTGGGGCGGACCCGCGGCGGCAGCTCAACAGGTGAACGGTTACCCGGACGACCTGTCCTCGTGCTGGAGCGACGACATGGGCTCCTTCTCGCTGCCTCTGGACCTGGAGCCGCTGCCCAGCCTGTTCAACATATCGCCCTGCGGCGGTTCGGCCTCCAGCACGCCGTACAAATCGGAACCGGGAAGTCAGGCGCAGAACCCCCTGCTGTTCCGCGATCAAAAACAACAGGGATCGGACGTGGCGGACGTACTGCTATCGCTGAAACACGCGGTGGTTCACCCGGGGCAGAGTCCGAACGATAAGTACGACGCCCAGCAGCATTTGTATCACCCGCAGATGTTGCTCTCACCCGGGGGATATTCCGGGTCGGGGCTGTGCGAGCAGAACTTCGGGATAGGTCAACAGACGCCGATTTTTCCAAGCATGTCCGTCAATGTGTCTATGAACATGACGATGCATAGTTACCATCATCCCAATGCCGGTTACAACTCAGATATAGCGTGTCCCCAGGTGCAATGGAGCGGGCAAAGCACGAATCAACCGTCCTATCAGAGCCAGGGACTATTGAGTCCCTCCTACGGAGGCACGTATTCGTTCACGGCCGATTTCCGGCCTCCCCAAGACGCCCCCTTGCTCACAACCACCGCGACATACAAACCGATGCCCATGACTTTTGTACCTCCCAAACGCCGGCCCAGTTCTTCGTTGCTGGACGAAGATAGCCAAAAACCGAACGTCTGCAGAATATGTGGGAAGAGTTACGCTAGGCCAAGCACGCTCAAGACGCATCTGCGAACTCACAGTGGCGAGAAACCCTTCAGATGTACCGACTGCAACAAGTCCTTCTCTCAGGCTGCTAATCTGACCGCCCACGTACGTACCCACTCCGGAGAGAAGCCCTTCAGGTGTCCAGTCTGTGATAGGAGGTTTTCTCAAAGTTCTTCGGTCACGACACACATGAGGACGCATTCCGGGGAAAGACCGTACAGGTGTAGGTTATGCAAGAAGGCCTTCTCCGACAGCAGCACCCTAACCAAACATCTGAGAATACACAGTGGAGAAAAACCGTACGAGTGCAAACTCTGCCTGCTTCGTTTCAGTCAGAGCGGCAATCTGAACAGGCACATGCGAGTACACGGCACTACCAACGGACTGCCCCCATGA
- Protein Sequence
- MDTSYVPNNPQFGLQFECNWGGPAAAAQQVNGYPDDLSSCWSDDMGSFSLPLDLEPLPSLFNISPCGGSASSTPYKSEPGSQAQNPLLFRDQKQQGSDVADVLLSLKHAVVHPGQSPNDKYDAQQHLYHPQMLLSPGGYSGSGLCEQNFGIGQQTPIFPSMSVNVSMNMTMHSYHHPNAGYNSDIACPQVQWSGQSTNQPSYQSQGLLSPSYGGTYSFTADFRPPQDAPLLTTTATYKPMPMTFVPPKRRPSSSLLDEDSQKPNVCRICGKSYARPSTLKTHLRTHSGEKPFRCTDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYECKLCLLRFSQSGNLNRHMRVHGTTNGLPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00870811;
- 90% Identity
- iTF_00376501;
- 80% Identity
- iTF_01307466;