Rfer009049.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- CDC5L_1
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000404.1:369802-374088[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-16 1.7e-13 50.8 1.5 2 46 9 54 8 54 0.97 2 3 5.3e-12 6e-09 36.2 0.1 1 45 60 103 60 104 0.93 3 3 6.6 7.5e+03 -2.5 0.0 7 20 783 796 782 797 0.82
Sequence Information
- Coding Sequence
- ATGCCGCGTGTAATGATAAAAGGTGGTGTTTGGCGAAACACCGAAGATGAAATTCTTAAAGCGGCTGTTATGAaatatggcaaaaatcaatggtCAAGGATCGCATCACTGTTACATAGAAAATCTGCAAAGCAGTGTAAAGCGCGTTGGTTTGAGTGGTTAGATCCAAGTATAAAAAAGACAGAATGGTCTAGGGAAGAAGATGAGAAATTGCTTCATTTAGCAAAGTTGATGCCTACTCAATGGAGAACTATTGCACCAATTATTGGACGTACAGCTGCTCAGTGTTTAGAGAGATATGAATATTTGCTTGATCAAGCTCAGAAAAAAGAAGATGGAGAGGATACTGCAGATGATCCAAGGAAACTTAAACCTGGAGAAATTGATCCTAATCCTGAAACTAAACCTGCTAGACCTGATCCAAAAGATATGGATGAAGATGAACTTGAAATGTTATCTGAAGCTCGTGCTCGTTTAGCTAATACTCAAGGTAAAAAAGCTAAAAGGAAAGCTCGTGAAAAGCAGTTAGAAGAAGCAAGACGTCTTGCTGCTTTACAAAAAAGGAGGGAACTTCGTGCTGCTGGAATTGAGGTTAATCCCAGAAGAAGGAAGAAACGTGGAGTAGATTACAATGCAGAGATTCCTTTTGAAAAAAGACCTGCAATTGGCTTTTATGATACTTCAAATGAGgttCTTGATCCCATGGCACCGGATTTCTCTAAAATGACACAGCAAGCCTTGGATGGTGAAATAAGAAGTGAACAGGAAGAAAAGGAAAGGAAGAAggataaacaaaaactaaagcAGAGGAAAGAGAATGATATACCACAAGCAATGTTGCAAAATCAAGAACCTGCCAAGAAAAGgTCAAAGCTGGTACTGCCTGAGCCACAAATTTCTGATCAAGAGTTACATCAAGTAGTAAAATTAGGGAAAGCAAGTGAAGTTGCCAGAGAGGTAGCTGCAGAGAGTGGAATTGATAGTACTGATACTCTTCTCAATGACTATACGGTGACTCCACAAGCAGCTGCTACACCAAGAACCCCCGCTCCAATGACAGATCGgatTCTTCAAGAAGCTCAGAATGTGATGGCTCTAACTCATGTGGACACACCACTTAAAGGTGGTTTAAATACCCCACTGCATAACTCAGATTTTAGTGGTGTTGTACCTCAAGCTCAAGTTGTAGCAACACCAAATACAGTTTTAGCAACTCCATTTAGGTCTACAAGAAGTGATGGAGGTGCTACTCCTGGTACAACTTTTTCAACACCACGTAGTGGTGCATTGGTACCAGTAGGTGGACAAAGTGGTAATTTTACTCCTTCTGTAAGagataaacttaatattaatccAGAAGAGGGACTTGAGGTAGCTGAAACACCTGCCCAACATAGAATGTTTCAAACATCTTTGAAAGAACAATTGAAAATGGGTTTAAGCAGCCTTCCACAACCAAAGAATGATTATGAAATAGTTGTTCCAGAGCAAATTGACCAAGAAATGCCTGAACAAGCTCAAGACCAGATGATTGAGGATCAGTCCGATATAGATAAGAGGTATCAAGAAGAACTGAAAGCGAAAGCGGCGAAAGAGCTTGCAATGAGATCCAAAGTTATTCAAAGAGATTTTCCTAGACCTCTTGAAGTAAATTTGACGATGTTAAGACCACTTAATGAGAACTATGCATTAACAGAACTTCAAAAAGCTGAAGAATTAATAAAGTGTGAAATGGCTACAATGCTGCAATATGACAATTTGAAAAATCCCATTCTTAATCCTATAAAGCAGTCTGCAAAATCGCAAGCACAACAATTAGCGTTTTTGGAGGAACATCCATATGAAAGTTTTGGTACAGATGAACTGGAAATAGCGAGAAGTATGTTGAAAAACGAAATGGAGATAGTAAAAACAGGCATGAATCACGGAGAACTGCCTATAGAAGCATACACTCAAGTGTGGGAAGAATGTTTAAGAGAGGTACTATTTTTACCCAACCAGAATAGGTATACTAGAGTTAACTTAGCTAATAAGAAGGACAGACTAGAATCTGCTGAGAAACGTTTAGAGCAGAATCGTGCCCATATGGCCAAAGAAGCCAAGAGAGCCGCGAAAATGgagaaaaaactaaaaattctaACTGGTGGATATCAGTCTAAAGCACAAGTTCTTATTAAACAGCTGCAAGATACATATGAGAGTATTGATCAGGCTTATTTGGAatctaatacatttaaatttttacaagAGCAAGAAAAGAGTGCATTACCTAGAAGAATACAGTCTTTGACCGAAGATGTTAGCAGGCAGATGGAACGCGAAAAGTCCTTACAAAATCGATATAATGATCTTCAGAATCAAATTAGGGATTTgcatgaaaaatacaaaaacctGGAAGAAAATCAGTTAGTTGAATTAAATATGGACAAAGCTCTAGATAACAATGATGCCATTCAAGGATCAGCAACTGATGACCAGAATGTCGTTAGTAGTTCTACAATTAATGGACTGGGtgaaaatggtatagaaaatcAAGCAGATGAAAATGGGGATGTGGAAATGAATTAA
- Protein Sequence
- MPRVMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIIGRTAAQCLERYEYLLDQAQKKEDGEDTADDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEVNPRRRKKRGVDYNAEIPFEKRPAIGFYDTSNEVLDPMAPDFSKMTQQALDGEIRSEQEEKERKKDKQKLKQRKENDIPQAMLQNQEPAKKRSKLVLPEPQISDQELHQVVKLGKASEVAREVAAESGIDSTDTLLNDYTVTPQAAATPRTPAPMTDRILQEAQNVMALTHVDTPLKGGLNTPLHNSDFSGVVPQAQVVATPNTVLATPFRSTRSDGGATPGTTFSTPRSGALVPVGGQSGNFTPSVRDKLNINPEEGLEVAETPAQHRMFQTSLKEQLKMGLSSLPQPKNDYEIVVPEQIDQEMPEQAQDQMIEDQSDIDKRYQEELKAKAAKELAMRSKVIQRDFPRPLEVNLTMLRPLNENYALTELQKAEELIKCEMATMLQYDNLKNPILNPIKQSAKSQAQQLAFLEEHPYESFGTDELEIARSMLKNEMEIVKTGMNHGELPIEAYTQVWEECLREVLFLPNQNRYTRVNLANKKDRLESAEKRLEQNRAHMAKEAKRAAKMEKKLKILTGGYQSKAQVLIKQLQDTYESIDQAYLESNTFKFLQEQEKSALPRRIQSLTEDVSRQMEREKSLQNRYNDLQNQIRDLHEKYKNLEENQLVELNMDKALDNNDAIQGSATDDQNVVSSSTINGLGENGIENQADENGDVEMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01344846;
- 90% Identity
- -
- 80% Identity
- -