Rfer000922.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000320.1:518199-535627[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-11 2e-07 30.9 0.0 1 39 449 488 449 492 0.90 2 4 1.1e-13 4.1e-10 39.5 0.1 1 39 503 541 503 544 0.95 3 4 3.8e-19 1.4e-15 57.0 0.0 1 45 558 603 558 603 0.98 4 4 5.2e-17 2e-13 50.2 0.0 1 39 610 649 610 653 0.94
Sequence Information
- Coding Sequence
- ATGTTCCCTATAACCAGGAGCAGCGCTGCGTTGTATCGTATTCGAAAAAAACACCCGATATTGCTCTGTAACTCTTGTCGGAGGACGATCCGGGACCATTCTCCCATTCTCCCGCTTGGAAACAGTGACACTAATCCCCTTTCCTCAAACGAAAAGATCCCACCAAGATTTAGAAACATACCAGACCAAAATAAACTCCATTATACCTTTAGTATTAAAAATCCGACTTTCTCCCCCGCCCGCGGCCCCCTCCCGGCCCTCGCCGGAATTGCATCCAGCGTCCTCCCCCGCCTCCTCATCCCGATGCTCCCTCATCACCGCAATCCTCCAATTGCTACCGACCCATCGGAACGAACCCCTTCCCCCCCCTCGCCCCGGGGGATCGGAGCAAATGAGAGCCGGAGAAAGACACAGAGAAAAAGAGAACAGAGACGGGAGGTATCCGCCGACGCCGCCGCCTCTCCCTCGCCCCCCGGGGTGGAAATATGTAGCAGGGGACCGAGAGAGAGAGGGGGGGAGCGTACGCAATCGGGCCATTCCCATCCGGAACATCTACCTCAGATACATCGCCTCAACTCCTCTCCATCGTCGAAACAGGATACAGAAAATAGGAAACTTAACTCGGAAGACAATAATAACAGGCAGTACAAACACagACGCTTACAAAATCAAAACTACACAAACGAAGaatcaaaaaacaaaagacTCGAATTTACAAGGACAGCGCGGAACTGTTCCAGAACGACTGAAAATGAAATGCCTATAGCTCTTGATGAACACAAAAATCGTAAGCAGCAACGGCAGGACGGATTTGAGACGCGACACGTCTCTTCACTCAACATGAGCAGTAATGGTCTCATGGCGGGGCAGGCAATCTTCTCGACCTTCGATTCCGACGATTTCCCGCCGGAGCCCCCCGCCCCCTCCGCCGTGCCCGTCCGCCACGTGGACATGGCGGACCACACGGCCGCCATGTTAGCCAACACGCCGATCCATCGCACCGACCTGTCCGACGCCACCACCAAGTACACGATGGAGATCAAGAAAGAGGTTGACATCAAGTTCGAGACGTTGCGATCCTTCGATCAGGACAGCCTGCTGGAGATGGACTCGCACATGAGCGGGGAACACTCGATGGGGTCCCACGAGGACGTCGCCGACCTGCGGCATCAGTCGATGATCAATCCCGATTTTACTCAGCTGCAGGCGAGGCTTCCCGGCCGAATAGATATGAACGATACTGGTGATAATGGCGATTTGTCGAGCATTAAATCTAACGGTCATAGCGACAATATGCACCAGAACAGTCAAAGACCCCACTCTGGTGGCGGACCCAAGACTTGGACGCAAGAGGACATGGATATGGCGCTTGATGCCTTAAAAAACCACAACATGAGCTTAACGAAAGCATCAGCTACCTATGGGATTCCATCCACAACGCTCTGGCAGCGAGCGCATCGATTAGGTATCGACACACCCAAAAAAGAAGGCCCCACAAAATCGTGGACCGAAGAAAATTTGAACAATGCACTAGAGGCGTTAAGGACCGGTACCATATCAGCTAATAAAGCAAGCAAAGCTTATGGAATCCCAAGCAGTACCTTATATAAAATAGCCAGAAGAGAGGGCATAAGACTGGCAGCACCTTTTAATGCCGCACCAACAACCTGGACCCCCGAAGACTTGGAAAAAGCTTTAGAATCGATTCGAACAGGTCAGACTTCCGTCCAAAAAGCCTCCACCGAATTCGGGATACCCACCGGTACCCTGTACGGTAGATGCAAGAGAGAAGGCATCGAACTATCTCGATCGAACCCAACGCCCTGGTCTGAAGACGCGATGGGCGAAGCCCTGGAGGCAGTCAGATTAGGTCACATGTCTATTAATCAAGCAGCCATCCACTATAATTTGCCTTATTCGTCGCTGTATGGACGATTTAAAAGGGGAATTAAGTACGACTCAGATAATATAGAGGTACATCAAGAAAATACTCAAGCTCACATGGAGATCCATCCGTTCGCGGGGATAGAATTCAACAACGGACAGCCGCACATCCAATACCACAGCCAGCCAAACAGCTGA
- Protein Sequence
- MFPITRSSAALYRIRKKHPILLCNSCRRTIRDHSPILPLGNSDTNPLSSNEKIPPRFRNIPDQNKLHYTFSIKNPTFSPARGPLPALAGIASSVLPRLLIPMLPHHRNPPIATDPSERTPSPPSPRGIGANESRRKTQRKREQRREVSADAAASPSPPGVEICSRGPRERGGERTQSGHSHPEHLPQIHRLNSSPSSKQDTENRKLNSEDNNNRQYKHRRLQNQNYTNEESKNKRLEFTRTARNCSRTTENEMPIALDEHKNRKQQRQDGFETRHVSSLNMSSNGLMAGQAIFSTFDSDDFPPEPPAPSAVPVRHVDMADHTAAMLANTPIHRTDLSDATTKYTMEIKKEVDIKFETLRSFDQDSLLEMDSHMSGEHSMGSHEDVADLRHQSMINPDFTQLQARLPGRIDMNDTGDNGDLSSIKSNGHSDNMHQNSQRPHSGGGPKTWTQEDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEVHQENTQAHMEIHPFAGIEFNNGQPHIQYHSQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -