Rfer022124.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- ct
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000091.1:1746-23624[+]
Transcription Factor Domain
- TF Family
- CUT
- Domain
- Homeobox|CUT
- PFAM
- PF02376
- TF Group
- Helix-turn-helix
- Description
- The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.3e-28 6.1e-24 84.2 0.0 2 72 305 376 304 381 0.95 2 3 1.6e-32 1.8e-28 98.7 0.0 3 77 699 774 697 776 0.96 3 3 1e-30 1.1e-26 92.9 0.0 3 75 925 998 923 1002 0.95
Sequence Information
- Coding Sequence
- ATGGCGGACGATATGGATCAAATCAATCAATTGGCCGAAGAAATCCAAAGACTAGAGGGGTGCATATCGAAGATTCAGGAATCCTCGGTCGCCCGAATCAGTAGCTTGGAAGAGCAGCTGGAACAGAAGAGACAACACATAGCACATCTAGAGAACAGGCTCGAAAGCCAGAAAGACTACGACGAACTGAAGAGACAAGTGACGATACTAAAATCGGACCTGGTCAACAATCCGGATGCCAAGAGTATCGAGCTGCTTCTGGAAAAGACAAAAATACAGGCCCAAGAACAAAGGGATAAGAGTCCGTCGAGGGAAAGCGAAGGGGTGGCGGAACATCAGGGCCAACAACACCTCCAAGGCCCCAACCTCCCGGTCACGCCTCCCACCAACCTCCCTCACCCCTTCCAAAACGTAGACGCGTTCGGCAGCCTCCTGGGCGAGGAGATCGTCTCCACCTGGAGGAAAACCATAGAGACCCACCGAAAGTCACCTTTGCCTTCCGCAGATGGCCCGATCAAGAGCAGCACGCCGCTGACCGAGAGCAATGCGGAGAAGAGCAGCACGGCGTCCACGCCACAGCCGATGGACACCGCGGGCCAGCACAGTCCCCACGACAACCTGCTGAACGGGAACCCGAAGAGCCCGCACGAGGACAACAACAACCACCATGTGAGCAACAACAACATTCCGCTGGCGGCCACCACCTTCGTGAATAACTTCCTGAGGTCGGACGATTCGCTCAAGAGTCCCTACCGGTTCGAGGAGCATCGGTCGCCGTTCAAGTTCGCCGAGGACCTGGGTATGGCGCCCGGTTCTATGGTGGGGAGATTGGGCGAGAGCCTCATTCCCAAGGGCGATCCCATGGAGGCTCGGCTTCAGGAGATGCTGCGGTACAACATGGACAAATACGCTTCCCAAAATTTAGATACTCTCAACATTGCACGTAGAGTACGAGAACTCTTATCCATCCACAATATCGGCCAGAGACTGTTTGCCAAGTACATCTTGGGACTTTCACAGGGAACCGTATCCGAACTGTTATCCAAGCCGAAGCCCTGGGATAAACTGACGGAGAAAGGACGCGACAGTTACCGGAAAATGCACGCCTGGGCCTGCGACGAAAACGCCATCATGCTTCTCAAGAGCCTCATACCAAAGAAAGGAAAAGACGGCACCATGTCGTTCGGGCGGCCCGATACCGACCTGACCGAAGAGCGCATCGCTCATATCCTGAACGAAGCCAATCAGTTCACGCAGATCAAAACGGAGTCGGACACGCACAGCAACGAGGATTCGAAATCGCCGCACGGCTGCAGCAGTCCGTTCTCCAAGGACTCGTCGCTCAACAAACGCCTGAAGAAGTACGAGAACGACGACATCTCGCAGGAGAAGGTCGTGCGTATCTATCAGGAGGAGCTGGCGAAGCTGATGACGCGCGGCCCCCGCGACGGTTTCCCCCAGGGTATGTTCCTGCCCCAATTCTTCAGTAACGGGCCCATGGATCGGACCGACGATATCCGCATGGCTTTGGACGCGTATCAGCGGGAACTGGCCAAGCTTAACCACAGTCAGCAATCGGCGCAGGTGCCCCTGGGACTATTGGCTCTGCAGCAACATGCCCTAGCGCAACACCAACAGAGCCAGCAGGCGCCGCAGGCCATGCAGAACCTGCCTGGCGCGCAGTCCTTGGTTCAACAGCATTCCAATGGTGGCGTGCAAGACTTGTCGCTGCCCAAAGACAAGGCAAGCAAAATGGTGAACGGTATGGACGACTGCAACAAGGACAAGGACGAGGACGCCATGTCCAGGCATTCTGGCAGCGCCTTTAGTCTGGTCCGTCCCAAACTGGAGCCGGGCACCGGACCCACTGGTAACAGCACGGCGTCCAGTCCGCTGGGCAACTCCATCTTACCACCGATGACACCCACCAGCGAGGACTTCACCGGCTCGGCCGCCGCGTCACCGCTCCAACGCATGGCGTCCATCACCAACTCCTTGATCTCCCAACCACCAACGCAACCTCACCATTCCACTCCGCAACGTCCACTGAAAGCAGTATTACCTCCGATAACCCAACAACAGTTCGACTTATACAATAACCTCAACACCGAGGACATCGTCAAGAAGGTCAAAGAGCAACTCAGCCAGTACTCAATCTCCCAAAGGCTGTTCGGAGAAAGCGTCCTGGGATTGAGTCAAGGTTCCGTCAGCGATCTGCTGGCCAGACCGAAACCGTGGCACATGCTGACACAAAAAGGAAGAGAACCTTTCATCAGGATGAAGATGTTCCTGGAGGACGATAACGCCGTCCACAAGTTGGTGGCGAGCCAGTACAAAATTGCTCCAGAGAAATTGATGAGAACCGGAGGATACGGCAACTCATGTCCGACATCTCTGTCCAAACCCCCAAATCTACCGCCAACATCGAAAATGTTGTCCGAAGCCGCGGGACTACTCACCAAAATCCAACAGGACCAACAAAGCTTGCTTCCAAGCACGTTGCAACTAGgcCCTCCTCAAGGCGGTCAACCACAACCACCACCACTGGGCCCCCCAGGCGCAGGCCAAATACCCCAAAGCCAACTGTTGAACCCTCTGGGTCTCCCACCGCATCACCCTATGGCTCTACAAAGTCAGGAGATTCTCAAGAAGCAAAGCCAGGGACTGCAGAGCAGTCACGGCATGCCTACCCATTCACCCATGGGACACCAGGGTATGAGGAACATGCACCAGCACATGAGCCCCAGCGTCTACGAAATGGCGGCCCTCACTCAGGACCTGGACACGCAGGTCATCACCACCAAGATCAAGGAGGCTCTGTTGGCCAACAACATCGGACAGAAGATCTTCGGAGAAGCCGTTTTAGGACTCTCGCAGGGATCCGTGTCAGAATTGTTGTCGAAGCCCAAGCCGTGGCATATGCTTTCCATTAAAGGCCGAGAACCTTTCATCAGGATGCAGCTCTGGCTGCAGGACGCTCATAACGTTGATCGTTTACAAGCTCTCAAAAATGAGAGACGCGAAGCCAACAAGAGACGAAGAAGTTCCGGTCCCGGCCAGGACAACTCCAGCGATACCTCCAGCAATGACACCTCCGAATTCTATCACTCGAACAGTCCCGGACCACAGGGCGTCCCCAACGCGAAGAAACAGCGAGTCCTCTTCAGCGAAGAGCAAAAGGAAGCCCTACGACTGGCTTTTGCCTTGGATCCTTATCCCAATCCCGCCACCATCGAGTTCTTGGCGCAAGAACTCAGTCTTAGTAGTCGAACTATAACGAATTGGTTCCACAATCATCGCATGCGACTTAAACAGCAGGTCCCACACGGAATGTCGTCGGATATCCCACCGAGAGACCAAAACACCTCTCAGCAACCATTCGATCCCGTTCATTTCCGCTTGCTCCTCAACCAAAGGCTAATGGAGCTGAACAAGGAGCGAATGGGTCTTTCCGGAGTATCCCTACCTTATCACCCATACCTGGCCACCAACCCCAGTCTGGCCGCTCTGATCTCCCGAGGTCTACTTCCAACCGGTGATTTAAACGACCTCTCCGCGCTTAACAACGTCGTCAAGGAGCAGATGAGCGGGCTGGACCTTAGCATGACCTCCTTGAAGAGGGAACCGACCGAATACGAGGACGAGGACGACGTGGAATCGAACGTGGGTTCCGAGGACTCGAACATATCGGGGAGTCTGCAGGACGAGAGCAAGCACGACGTCAACAAGGAATCGAACGTTTCGGCGACGAGTCATAGTCAGGGTAGATCGTCGAGAAGAAAACCGGCGGCGCCGATGTGGGTGAATCCTCACTGGGAGGAGGAGAAGAACGCTCAGAGTCAGGAGAAGAGCCAAAACAATCCGGACGAGGTCATCATAAATGGGGTGTGCGTCATGCAAACCGACGACAACTACGCTCCCAGGCGATCGTCCACCGAGGAGACCATCCGCGTGGAACCGCAGGCGGTCCTGGACCGCTTCGAAGACGATCGCAGCGAGACCAGCAGCGTGAGCAACGACGACCGTCACGATCAGAGTCACGAGAACGAACGAGAGCGACAGGAAACGGAAGACGAGCACCGAGACAATCAGGTCGACGTCAACGAGGATCGCGACGCGGACTGTCAGAAGGAGGTGAAGCAAGAGAACGAGGACGAGCGATGGGACTACTGA
- Protein Sequence
- MADDMDQINQLAEEIQRLEGCISKIQESSVARISSLEEQLEQKRQHIAHLENRLESQKDYDELKRQVTILKSDLVNNPDAKSIELLLEKTKIQAQEQRDKSPSRESEGVAEHQGQQHLQGPNLPVTPPTNLPHPFQNVDAFGSLLGEEIVSTWRKTIETHRKSPLPSADGPIKSSTPLTESNAEKSSTASTPQPMDTAGQHSPHDNLLNGNPKSPHEDNNNHHVSNNNIPLAATTFVNNFLRSDDSLKSPYRFEEHRSPFKFAEDLGMAPGSMVGRLGESLIPKGDPMEARLQEMLRYNMDKYASQNLDTLNIARRVRELLSIHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDENAIMLLKSLIPKKGKDGTMSFGRPDTDLTEERIAHILNEANQFTQIKTESDTHSNEDSKSPHGCSSPFSKDSSLNKRLKKYENDDISQEKVVRIYQEELAKLMTRGPRDGFPQGMFLPQFFSNGPMDRTDDIRMALDAYQRELAKLNHSQQSAQVPLGLLALQQHALAQHQQSQQAPQAMQNLPGAQSLVQQHSNGGVQDLSLPKDKASKMVNGMDDCNKDKDEDAMSRHSGSAFSLVRPKLEPGTGPTGNSTASSPLGNSILPPMTPTSEDFTGSAAASPLQRMASITNSLISQPPTQPHHSTPQRPLKAVLPPITQQQFDLYNNLNTEDIVKKVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGNSCPTSLSKPPNLPPTSKMLSEAAGLLTKIQQDQQSLLPSTLQLGPPQGGQPQPPPLGPPGAGQIPQSQLLNPLGLPPHHPMALQSQEILKKQSQGLQSSHGMPTHSPMGHQGMRNMHQHMSPSVYEMAALTQDLDTQVITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLQDAHNVDRLQALKNERREANKRRRSSGPGQDNSSDTSSNDTSEFYHSNSPGPQGVPNAKKQRVLFSEEQKEALRLAFALDPYPNPATIEFLAQELSLSSRTITNWFHNHRMRLKQQVPHGMSSDIPPRDQNTSQQPFDPVHFRLLLNQRLMELNKERMGLSGVSLPYHPYLATNPSLAALISRGLLPTGDLNDLSALNNVVKEQMSGLDLSMTSLKREPTEYEDEDDVESNVGSEDSNISGSLQDESKHDVNKESNVSATSHSQGRSSRRKPAAPMWVNPHWEEEKNAQSQEKSQNNPDEVIINGVCVMQTDDNYAPRRSSTEETIRVEPQAVLDRFEDDRSETSSVSNDDRHDQSHENERERQETEDEHRDNQVDVNEDRDADCQKEVKQENEDERWDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00443834;
- 90% Identity
- iTF_01307131;
- 80% Identity
- iTF_01307131;