Rfer018879.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- ARID5B
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000086.1:1952527-2314791[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7 2.3e+04 -3.8 0.0 37 47 211 221 206 226 0.78 2 2 3.8e-23 1.2e-19 70.8 0.0 1 89 314 400 314 400 0.93
Sequence Information
- Coding Sequence
- atggatataaaagaTGTACAGTTGGTGGGAGGCCCGTGCGGGCAACATGGACCCTACACTTTCTACAAGGCGTTCAAGTACACGAAAAACGGAATGAGGAAAATCATAAACCTAAGCGAGTTTTTCTTTGTGAAAATGTGGCGCGATTCAGACTTATTGTGCATTGGTGAATTGCAGTTATTGTGGATTGATAAAAATAACGAACAGACTTTGACTAGTTTGCGGCTGTACTTTCTTCCGGAAAACACACCGGAGGGTCGTCTGGATCACGGCGAGGATGAAGTACTGGCTATAGCGGAGAAGGTGGTTATACGACTAGAGGACCTTATTACATGGATCACAGTGGAGGCGGAATGGAACTGGGGAAGGTTAGCTAAATGTGAAGAAGAACTAAAAGAAGTAACGGTGGAGCCAGAAAAGTGTGCGTCACCGAGAAAACCAGCAGGGAACAGTTTTAGTTTATCCGAAAATGGTTTGGACTATTCTGACGTCGAACAAGAACGTGAACAGATCGAGCCTTCGGAAGATGACAAAACAAAACCTCACGTGATTATACTGAGTTTTCCCAAGTACTGCCGCTACAGGGCCATGATGAAACGACTAGAAGGAGTCGAAAACATGTATCTTAAATATAAGATAGTTAATGCTCTTGGTGGATTCTATGTTACAAATCCCAATACTAGGGTCTTGTTTTGTCGTGACACATTCGACTATCCCGAATTGGAAGGTCACGAGCTGCTTTGCAATCACCTCGCTCCGAAACTGAAAGGTCGTCCTCGGGGCAAACGGAAAAAACGAAGCATTTCACCAGGATCGGAAAGCAACGAATCAGAATCCTCCATTACCAACCATTACACCAGGTCATCAGATAGAGCGAATGGAGCCAGATCGGATTCGCCTGTAGCGACGCGTCGAAGTACAAGATGCcacgaaaataatgaaaataagcaATTCATGAAGGTTTTAACCGCTTTTATGAAATCAAAACACATACCAATGGGTCGTATCCCATCACTTGGCTATAAGGAATTGAACTTGTATGAGTTCTTCACGAAAGTCCAAAAATTAGGCGGTTATGATTGTGTTACTGCCAATCGCTTCTGGAAATGCATTTTCGATGATATGACCGGCCATCTCAACAGCACGAGCGCAGCTACTATTATTCGAAGACATTATGAAAGatTCTTATTGGCATACGAACGACATCTAAAAGGGGAAGAATACAAGCCTCTTCCTGTTTCTGAAAGAAGAAGGTTGAAAAGCAAACGCTCAAGTACTGCAAGTAGTTGTGCCAGCGATCCCGAATCCAGCAACGATACCATAACCCCATCTACTTCGAGAAGCGGTAGTACACCTCCAACAACCAATGAAACTAAGGAATCGCCAACCGGAAAAACATCATCTTTAAGAAGTATTCGTGTGAAAACGGAAAGACAGAAGGATAAACAAAACTCAGTGAGTGATAAAACGAGTGTAACTCCTGTGGGTAATCCTGAACACGGTGTTAAAGTGGAAACGGAAGACGTCAAACCAGATGAAGCAGTTATTATCAAATTAGAAGATTTCAAGTCGGAGACAAAAACGGAACCAAAACCAAAACATGAAATCGGCGAAGAATGTAAAGATGGATCGTTTAAAACAGAGCTCAAAACTGAAGTGAAGGATGAACCAGATACCACTCTAAGCGATCCCACCATCGTAACGGCTTCCATACCTGAAGGAACCAAAACTGACATTTCCATTCCCGATAAAAATGCAGAACCTTTGACCACGGCTGTAGCCCCAGTGGCTATAACGCTAATTCCGGATAAGATTCTGTCTCCAGTGGAAGGCAAGGAAAACATACCCGTCATAAAAACAGGTGATACTGCCAGCGCGACTACAAATGTTACACCTGAAATTATTAATGTACCATACAAAGCCAAGACACCAGATGTGAAGACGGATAAtgaaaacacatataaaatcatgccaaataaatttatcaacgacgtaaaaaaaatcaaactggACATATTGAAGGAAGGTGGACTGGAAGTTACTCCGGTTCGAGCAGGTCTTATATCACCAGCTGTAAAAGATATTCGCCCTTCGGTAATACAGCCGATTACGCACACAAACACCTCAAAACCGGACATGCCACCTCCGTTAGTCAGCAAAATATTGCCGGCAAGAAACAGCATATTTATCGTCCCTCCAAGTATAAATATCACACAGATAAAATCTTCGACAAGTACATCAATTAAACCTGCCATAAAGTCCGACACTATTTCATTTGCCAACGGCGCAGTACCACCAAAAGTTGTTCAGTCGAGATCGATTTATTCTTATTCTGAGAAAACGGTTTATGGGAACCCTAAAGATGGTTTACCATCGGCGATGGTACCGCAAACACCCAGGTTTATAAGACAGGGTGGCGATCCGATGGATCTATCTATAACCAGTCCTCAGAAACCTGTTGTGGAAATTATGCGTATACCTCAAAGTTCAACTTCCAATGCTCACGTATCCTACAATAAAGAAAGCGTAACAAAGAACCTATATAAAATACCATCGAACACTGTATTGGATGGCAGGAAGTTGGGTTCGAATCTAGAAATCACCGTGGTCGGTCCAAAGGCTTCAACAAATTCATCTAAACCTGCTAGTTACGTCCCAAAAGCGCCGACTCACAGACGAGCTAGTCATGAGCCTTATGCTTCCAAAATTGCCCGATTGAAAGCAGATGAAAACGGTAGTAAACACAGCAAGTACAACATTCCTCCAGGGCATAAGAATAACGGAGAACTAAATATTCCCAGTctgtttgaaaaaaataatataccagTAAACATCAATAAAAACGAACCAAGACATACACCACCGGTTCAGAAGACTCCTTTAGTTTCACCATTACCTCCTACAATGCCCAATTACTTATCACATTTTAATGGACCAGAGACAGCTAATGCAATGAACCAATATTTACCTCTATTAGAGCCGCTGTACTATCAGCATTTGCAGGCAGCTGCATTTCAGAATGTTTATTCAGGTTTTCCGGGTATGGCTTCTTCGCTACCACTACAATTACCAATACCCACACCTGAACAATTGAAATTCTATGCTGAATTCATGGCTCATAGTGGAATGAATATATTTCCAAATCCAACCAATGGACAATCTTCAATGAACAATAAGAAGCCATAA
- Protein Sequence
- MDIKDVQLVGGPCGQHGPYTFYKAFKYTKNGMRKIINLSEFFFVKMWRDSDLLCIGELQLLWIDKNNEQTLTSLRLYFLPENTPEGRLDHGEDEVLAIAEKVVIRLEDLITWITVEAEWNWGRLAKCEEELKEVTVEPEKCASPRKPAGNSFSLSENGLDYSDVEQEREQIEPSEDDKTKPHVIILSFPKYCRYRAMMKRLEGVENMYLKYKIVNALGGFYVTNPNTRVLFCRDTFDYPELEGHELLCNHLAPKLKGRPRGKRKKRSISPGSESNESESSITNHYTRSSDRANGARSDSPVATRRSTRCHENNENKQFMKVLTAFMKSKHIPMGRIPSLGYKELNLYEFFTKVQKLGGYDCVTANRFWKCIFDDMTGHLNSTSAATIIRRHYERFLLAYERHLKGEEYKPLPVSERRRLKSKRSSTASSCASDPESSNDTITPSTSRSGSTPPTTNETKESPTGKTSSLRSIRVKTERQKDKQNSVSDKTSVTPVGNPEHGVKVETEDVKPDEAVIIKLEDFKSETKTEPKPKHEIGEECKDGSFKTELKTEVKDEPDTTLSDPTIVTASIPEGTKTDISIPDKNAEPLTTAVAPVAITLIPDKILSPVEGKENIPVIKTGDTASATTNVTPEIINVPYKAKTPDVKTDNENTYKIMPNKFINDVKKIKLDILKEGGLEVTPVRAGLISPAVKDIRPSVIQPITHTNTSKPDMPPPLVSKILPARNSIFIVPPSINITQIKSSTSTSIKPAIKSDTISFANGAVPPKVVQSRSIYSYSEKTVYGNPKDGLPSAMVPQTPRFIRQGGDPMDLSITSPQKPVVEIMRIPQSSTSNAHVSYNKESVTKNLYKIPSNTVLDGRKLGSNLEITVVGPKASTNSSKPASYVPKAPTHRRASHEPYASKIARLKADENGSKHSKYNIPPGHKNNGELNIPSLFEKNNIPVNINKNEPRHTPPVQKTPLVSPLPPTMPNYLSHFNGPETANAMNQYLPLLEPLYYQHLQAAAFQNVYSGFPGMASSLPLQLPIPTPEQLKFYAEFMAHSGMNIFPNPTNGQSSMNNKKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -