Basic Information

Insect: Rhorus exstirpatorius
Gene Symbol: -
Assembly: GCA_963564615.1
Location: OY751316.1:40724134-40727889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00028 0.028 15.3 1.0 1 23 162 185 162 185 0.96

2 13 0.0058 0.58 11.1 4.5 2 23 325 347 325 347 0.93

3 13 5.6e-06 0.00055 20.6 1.1 3 23 402 423 400 423 0.96

4 13 6.4 6.4e+02 1.5 7.6 3 23 510 531 509 531 0.95

5 13 0.23 23 6.1 0.2 1 23 582 605 582 605 0.95

6 13 0.01 1 10.3 0.5 2 23 653 675 652 675 0.96

7 13 0.0082 0.81 10.7 0.2 3 23 701 722 699 722 0.93

8 13 0.15 15 6.7 4.4 2 23 788 810 787 810 0.96

9 13 0.016 1.6 9.7 2.4 3 23 825 846 823 846 0.94

10 13 0.00079 0.078 13.8 0.1 2 23 891 913 891 913 0.93

11 13 0.14 14 6.8 1.6 1 23 994 1016 994 1016 0.98

12 13 0.00041 0.04 14.8 1.0 3 23 1033 1054 1032 1054 0.98

13 13 0.052 5.2 8.1 0.3 1 23 1130 1153 1130 1153 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00028	0.028	15.3	1.0	1	23	162	185	162	185	0.96
2	13	0.0058	0.58	11.1	4.5	2	23	325	347	325	347	0.93
3	13	5.6e-06	0.00055	20.6	1.1	3	23	402	423	400	423	0.96
4	13	6.4	6.4e+02	1.5	7.6	3	23	510	531	509	531	0.95
5	13	0.23	23	6.1	0.2	1	23	582	605	582	605	0.95
6	13	0.01	1	10.3	0.5	2	23	653	675	652	675	0.96
7	13	0.0082	0.81	10.7	0.2	3	23	701	722	699	722	0.93
8	13	0.15	15	6.7	4.4	2	23	788	810	787	810	0.96
9	13	0.016	1.6	9.7	2.4	3	23	825	846	823	846	0.94
10	13	0.00079	0.078	13.8	0.1	2	23	891	913	891	913	0.93
11	13	0.14	14	6.8	1.6	1	23	994	1016	994	1016	0.98
12	13	0.00041	0.04	14.8	1.0	3	23	1033	1054	1032	1054	0.98
13	13	0.052	5.2	8.1	0.3	1	23	1130	1153	1130	1153	0.95

Sequence Information

Coding Sequence: ATGACGTCCACGGTGGCCCGTGAACAATTGGGAATGATGATGGAGCAGCAAATGAGTGAGATCGACAGCGAGAGTTCGAGCAGCGGTGAGGATCGTGAGGCGCGTAAACGATTGCGCGAGGATACGGACaacggcggcggcggtggcagtCCGAAAAAGCGTCGGAAACAAACGACACCGGTGAGATTCCCGACGTCGCTGATGAGCAACAGCGGCGAGCGTCACGAGtccgaggaggaggaggaggaggaggaggaggaggaggaggaagatgACGATGATGAAAACGATTTGGACGGTGAGGATCATTGCGAGGCCGAGAATGGAGTTTCGACCGTACGAGATGACGCGCATCAATCGCCGCTCGAAGGTAAGCCAAGAACGATAACGCCGCAGGTGTTTTTACGAAATATCGTCGGACAAACGACAACGGGAACGGGAACGATGGCAACTTTCGCGAAAGATGAGAATCTCAATAGCGAGTTTCGCTGTCAGTTTTGCGGTAATACGTTCAACGGAAAGGATACACTGTCGCGGCATCTCGAGTCCGAGCATGCAATAGTTTGTAGCGCGTTGCAAGCGGCACCGAGTCATTCACCGCTGTCCGATAACGTTAGGGTCAAGCTCGAGCCGTCGAATCAGACTCACGAGGATCCCGAGAGTCCCGTTAATCTCTCGGGTCTAGATATTAAGAATTTCGCTGCCAATTGGCTGAATTCACAAGCTCAGgcgcaacagcagcaacaacaacaacaacaacaacaacaacagatTCAATTGCAGTCGCAAAATCCCGATGATTGGACATCCCCGAGTCCCGTAACTTCCATTCCCAATCATCTTCAGGCCCTCGCGTTTCCCGGTGCTCTGGCACAATACCTTCCCCTGCCTGGTTTTTCCCTCAGCGACGCCGGCCAACTCAACCGTCCACCCATCGGCCCGGCGCCCATCAGGATCTTCAATCCCGACGCCTACTGCGATCTTTGCAACAAGGAATTTTGCAACAAATACTTTCTCAAGACCCACAGAGCCAACAAGCATGGAATTTACGTTGACGCGCCTTGTCAGAATCCCGGCGATAACGCGATACCCGGTAGCATGTTCGCCGATGCATTTTCCGGTGGTAGCGTTAAATTGGAACAACCGCAGAGGATCGAAATCCCGGCCCCGTTTGTTTCGGTACCCTCGGGCAACGCGATAGCCTGCGATATTTGTCAGAAGCGCTTCAAGAACGAGGACTCGCTGAGAAAGCACAAGCGCAAGATTCACAATGACTCGATGGACAATCAAGAGTCACACTCGCTGCCGGCAACGGGTAGCAGCATCGACGATGAGCGCGAAACATCGCGCAACAGTCCTAGCGCAATGGAGGCCCTATTCAAGCAGGAATTCGGGGTTGAACAGGAAGATACGAAATTTATGCCAGCACCGCGTCATTTATCGCCGCAATCGAGCCAGCAGGCCAGAGACTCGGGCTTCAATGTCGATCGTCTACGAAGACTCGGGGTCATTAATCCCGAAGCATTCTGCGAGATATGCTGCAAGGAATACTGCAACAAGTATTTTCTTCGTACCCACAAGATGAAGAGGCACGGTATATACGTTCAGGATAGCGAAAAGCCACCGAGCAATCCTGGCAGCGCGGCGAGCTGGCATCAAATACAAACGAGCCCGTTGAATCTCATCGTTGCGGACAGCAATGCCGGAAGCTCATCGGAATCGGGCGATCGATCCGGGGAGGATTACGAGTGTAAACCATGCGGCATACGTTTTCAGACTCTGGGACTTTATCGCGGACATCGCGCGAAGATTCACGAGATTGACGGGGAAAAATCACCCAAGCAGGATTACGGAATAGACCTGACGGATCAACGCACCGATTCCATTTCCGAGGATCTTCAGAAACTTCAGACAATGATTTTGCAACTAAACGGCCTGGAATCCGGCAAAACGTCGACGTGCGGTGTGTGCACCAGAGAATGCGAGAATATCGCTGCACTGAGGACGCATATGAGGCTGGAGCACAGTGGAATTACGGAAGAAGTCACCTCACCGTCGCAGGctaatgaaaatttgttaaacggCAGCAACTCGACGTTTTGCACTCTTTGCGAGAAGGAATATCAGAATCCGGAAGCACTGAGACAACATATCACGGAGGAACATCGAAGCAGCCCGAACAACGTTACCACCACGATTTCACCGCAGATTCCGATAATTTCGCCCACCGTTTCGATTCAAACTACCGTTCCGACAGTCGCGGCATCGGTAACGATTCCTGTGCCATCGATGAGCTTGCCCCAAACGCCAACGGTACCACAAACCGAGAGAAAAATCACGTCGATGACACCAACCTCGAGCTACTGCGAGCTATGTCGCAAAGAATTGTGCAACAAGTACTTCATGAAGACTCACATGCAGAAAATGCACAATATCGAGATTGAGAACGGTTCGCAGATCGGTGGTGTGATATGCAACATATGCAACAAGGAATTGTGCAGTAAATATTTTCTTCGCGTTCACAAGCAAAATACTCATGGTATCGTCGACGAGGGTGGCACAGCGTCGAGCAAGCAGGAAGCTTACGAGTCATCGAGCAACGACGATACCGCACTTAAGCCCGATCAGCTCGGCGATTTGAGCCATCGTTATTTCACTCATTTCACGGAAGTTTGCCCGGTCTGCAGTCGACGCTTCAGAAGTATAAAATGGCTCAAGGCTCATCTTCTTGGTGATCATGGAAAAGTGGGCATCGACAAGTGGCGCGAGCTCGAGAATCAGTATCAAAATTCATCGAGAGGAGGTATAAGAAGTACGAGCGGTCCCGGTAGATCGGTTCCGCAAAATCAGAGTATAAAAATACCCAATGGATCGGAGATGGTGCAGCAACAGATGAAGAGCAACGACTACGCGGGTCTTGGAAATCAAGTATTGTCGAGTCTATTTGGCTCGACGACGGACGAACAACAGGCCAAGAGCTATCGTTGCTCCTACTGCAGCTTCACCACCACGGTATTGCCATTTTTGTTTCTCCATGAGAGATCACACGCGAGTCCGCAGGATAACAATCCAGGACTCGAGAGCGCTTCACTTCTGTGTCCAATATGCTCGCAGGCTTTTGTACAACCCGAACTGTTGCATCATCATCTACTGACGCGTCATCAGTTCGCGGGTCTTTCGACGCAATTATCCGCTCCGTTGATCAACAGTCCGAGGCTCGAGGGTCTTAACGCCGAGAGGAACAATGAGATTTACGAGAAGGGCGAGTACGAGGCAAAGGAGGATCGTCGTCAGTCAAGTCCCCACGTTTCATTGGGAAACAACGGCGAGTCGTTGAAGAGCCAAAAGACGGAGGAAACAGCGGTACAGGTTACACCGCAGGGAGCTTACAAGTGCGCGCAGTGCGGTTACGCGACGGCAAATCTCAAGAGGATTAAGAAACACATAGGAAAGGATCACAAGACAATGGGCGACCCGACCGAGAGCGTAATCGATGAGCTTAGCAAAACATTGAGGGACGTTGCGAACAAGCACAAATTACCGGCGAGTTACGCAATGCCGCAGGACATGAATTCTAATCCTGACGTTACCACGGTCATGCAACCATTTTTTATTGAGGAACGGGATAACAACGGGCGAGTGGGCGATGAAACGAGCAACGAGAGACGCTTTGCACCTGCTCTGGTTTATTTGCCAATCAGAGCGAGGATCAACAGTTCCCTTACCGCATCCTTCAATCTTAGTCCCGCCCGATAA
Protein Sequence: MTSTVAREQLGMMMEQQMSEIDSESSSSGEDREARKRLREDTDNGGGGGSPKKRRKQTTPVRFPTSLMSNSGERHESEEEEEEEEEEEEEDDDDENDLDGEDHCEAENGVSTVRDDAHQSPLEGKPRTITPQVFLRNIVGQTTTGTGTMATFAKDENLNSEFRCQFCGNTFNGKDTLSRHLESEHAIVCSALQAAPSHSPLSDNVRVKLEPSNQTHEDPESPVNLSGLDIKNFAANWLNSQAQAQQQQQQQQQQQQQIQLQSQNPDDWTSPSPVTSIPNHLQALAFPGALAQYLPLPGFSLSDAGQLNRPPIGPAPIRIFNPDAYCDLCNKEFCNKYFLKTHRANKHGIYVDAPCQNPGDNAIPGSMFADAFSGGSVKLEQPQRIEIPAPFVSVPSGNAIACDICQKRFKNEDSLRKHKRKIHNDSMDNQESHSLPATGSSIDDERETSRNSPSAMEALFKQEFGVEQEDTKFMPAPRHLSPQSSQQARDSGFNVDRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIYVQDSEKPPSNPGSAASWHQIQTSPLNLIVADSNAGSSSESGDRSGEDYECKPCGIRFQTLGLYRGHRAKIHEIDGEKSPKQDYGIDLTDQRTDSISEDLQKLQTMILQLNGLESGKTSTCGVCTRECENIAALRTHMRLEHSGITEEVTSPSQANENLLNGSNSTFCTLCEKEYQNPEALRQHITEEHRSSPNNVTTTISPQIPIISPTVSIQTTVPTVAASVTIPVPSMSLPQTPTVPQTERKITSMTPTSSYCELCRKELCNKYFMKTHMQKMHNIEIENGSQIGGVICNICNKELCSKYFLRVHKQNTHGIVDEGGTASSKQEAYESSSNDDTALKPDQLGDLSHRYFTHFTEVCPVCSRRFRSIKWLKAHLLGDHGKVGIDKWRELENQYQNSSRGGIRSTSGPGRSVPQNQSIKIPNGSEMVQQQMKSNDYAGLGNQVLSSLFGSTTDEQQAKSYRCSYCSFTTTVLPFLFLHERSHASPQDNNPGLESASLLCPICSQAFVQPELLHHHLLTRHQFAGLSTQLSAPLINSPRLEGLNAERNNEIYEKGEYEAKEDRRQSSPHVSLGNNGESLKSQKTEETAVQVTPQGAYKCAQCGYATANLKRIKKHIGKDHKTMGDPTESVIDELSKTLRDVANKHKLPASYAMPQDMNSNPDVTTVMQPFFIEERDNNGRVGDETSNERRFAPALVYLPIRARINSSLTASFNLSPAR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -