Basic Information

Insect: Rhorus exstirpatorius
Gene Symbol: SCRT1
Assembly: GCA_963564615.1
Location: OY751316.1:21609408-21612805[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.3e-06 0.00023 21.8 2.9 1 23 528 550 528 550 0.98

2 5 0.031 3.1 8.8 0.2 2 23 560 581 559 581 0.94

3 5 1.5e-06 0.00015 22.4 0.4 1 23 585 607 585 607 0.97

4 5 4.9e-08 4.9e-06 27.1 0.6 3 23 615 635 613 635 0.98

5 5 4.5e-06 0.00045 20.9 1.1 1 21 641 661 641 662 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.3e-06	0.00023	21.8	2.9	1	23	528	550	528	550	0.98
2	5	0.031	3.1	8.8	0.2	2	23	560	581	559	581	0.94
3	5	1.5e-06	0.00015	22.4	0.4	1	23	585	607	585	607	0.97
4	5	4.9e-08	4.9e-06	27.1	0.6	3	23	615	635	613	635	0.98
5	5	4.5e-06	0.00045	20.9	1.1	1	21	641	661	641	662	0.95

Sequence Information

Coding Sequence: ATGCCACGATGTTACATGGTGAAGAAAGCTCTGTGCAACAAGTACTTGAGCATTGCTAGAGGCTTTGAGAACTGGGGACGTGCCGAAAGAGACAGCCCGCCATCGCCGACAGCGATGCAATTGCTGGTATCGCCTATCGAAGCATGCACCGCACTTCCTGTTGAGCAAGAATGTCTGTCGTCGCAATTGAAAGACCTTCCGGCCTCGAGCGCCCCAGTAGTCCCGGAAGTTCCGACGCCAGAGATACCGGAAGTGAATATTGCTTCGTGCCCGACCTCCAGTTCACGTGGAGACGACCCGATGGAATGTTCCACTTCCACGGGAGTTACGACTTGCACGACGAGGCCATTGTCACCCGTCAAGAAAGCCTCgaatcatcattatcatcaccatcatcatcatcgagaATCTCCGATTCCCACGGCCACTTCACCGGATTCAACTGTCGTGATCGATGTCAGCAGCAGCGGTAGCAGTGAAACGAACAGTCCGACATTCGAGATCTCGGAGAGGGCAACGACAAcgataacaacaacaacagcagcaacgaCAACAAGGGGAACGATGACAAGGCGACCGAAAACCAGAATGAGCTGCATATCCCCGGCCGCTGTTCCCACGTCGAAACAGGTGTCCGTAGTCACGATGCATCGTACGAATCCATCGAGCGTTCAACCAACCCCTCTCAACAATAATTATTCGATAAATCTCAATGACGCGTCATCGTTGTCGAATTCCACGCCCGTGATTACGACGGATACATCGAATCAGTTGTGTTACACGAAGCTAACCGACACGGAGCATCGAAATTGTTCACCGGTCTACACGGGTCTCGATGTTCTCGTTCCCGTACAGACAATTTGCCAATTGCCAAGATGCGACGTGGCCCAAGAGACACCGATGTTTCGCGACAGATCGGCAGCGGAGACCGAGGCGGCTCACGATCTCTTGGAACTCTCACGCTCACTGCCACCTCTGCCACCGCCCAGCATCGCGATCGGACCGCAGAATGTGATCGAGACACCGGCTACCGAGAACGTTCAGGAAATCAGTATTTATCAACCTGCTCAGCCATCGCCCATCTATACATTGAACACGATAGATCTCAGTGGTGGAACAACGACGCTTTATCAGCAACAATCTTCGGGAATAATGTACGATCCTGTCGCCGCGACGACCCTCGTACAACAGACCTCGACCGGTGTTTTCATTCCATTGTCACCGGTTCAAGAGATACTCTTCACTTATGCCACCGCCCCGAGTGGAATGCCATCGATAATAGCAGCTCAGCCGGCACCGATCGAGCCACCACCGCTGACACCACCGGCCTCGGAGTGCAGCAGCGACATCGAGAACAATAATCCGAATTCACAGCTACCGAGTCAGAGGGACAAGGAGGTTCAAACCATCACGGAGCAGACCGAGGTCAAGCCGGGAACATACACGTATGACACGCTTTTGGTTGCCGATGGAAGATCGAAGAACAAGAAACAGCCTAACGCCTGTCAAAGTACAGCGCAGAACGAGAATCTGGAGATCAATGACAACTCTGAACCACCGGAGGCATCGAAAGCCGGAAGATACGTGTGCTGTGAATgcgGCAAGCAATATGCAACTTCATCTAATCTTTCACGACACAAGCAGACCCATCGTAGCATCGATTCGCAATCTGCGAAGAAGTGCATTCACTGCGGCAAGGCCTACGTTAGCATGCCCGCGCTTGCAATGCACGTGCTGACACACAAGCTGACCCACAGTTGCGGAGTTTGCGGAAAAATGTTTTCCAGGCCCTGGCTGTTGCAGGGTCACTTGAGAAGTCACACGGGCGAGAAACCATATGGCTGTGCTCACTGCGGCAAGGCATTCGCCGATCGTTCGAATTTACGGGCGCACatgcagacgcactcgtctgaCAAGAACTACGAGTGCCCAAAGTGTCACAAATCTTTTGCCCTCAAATCTTATCTCAACAAACATCTCGAATCGGCCTGTCAGAGGGACAACTGCGACGAGAGCAGCAATGACGTCGATACACCTGGCTCTTACGGGGCTGCTGTTACGTCCACGAATAATTGCAATTCGGAGGTACTGTTTCAATTACTATAA
Protein Sequence: MPRCYMVKKALCNKYLSIARGFENWGRAERDSPPSPTAMQLLVSPIEACTALPVEQECLSSQLKDLPASSAPVVPEVPTPEIPEVNIASCPTSSSRGDDPMECSTSTGVTTCTTRPLSPVKKASNHHYHHHHHHRESPIPTATSPDSTVVIDVSSSGSSETNSPTFEISERATTTITTTTAATTTRGTMTRRPKTRMSCISPAAVPTSKQVSVVTMHRTNPSSVQPTPLNNNYSINLNDASSLSNSTPVITTDTSNQLCYTKLTDTEHRNCSPVYTGLDVLVPVQTICQLPRCDVAQETPMFRDRSAAETEAAHDLLELSRSLPPLPPPSIAIGPQNVIETPATENVQEISIYQPAQPSPIYTLNTIDLSGGTTTLYQQQSSGIMYDPVAATTLVQQTSTGVFIPLSPVQEILFTYATAPSGMPSIIAAQPAPIEPPPLTPPASECSSDIENNNPNSQLPSQRDKEVQTITEQTEVKPGTYTYDTLLVADGRSKNKKQPNACQSTAQNENLEINDNSEPPEASKAGRYVCCECGKQYATSSNLSRHKQTHRSIDSQSAKKCIHCGKAYVSMPALAMHVLTHKLTHSCGVCGKMFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSSDKNYECPKCHKSFALKSYLNKHLESACQRDNCDESSNDVDTPGSYGAAVTSTNNCNSEVLFQLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -