Basic Information

Insect: Rhorus exstirpatorius
Gene Symbol: -
Assembly: GCA_963564615.1
Location: OY751316.1:14461284-14470338[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.091 9 7.4 0.5 3 21 259 277 259 278 0.87

2 12 0.003 0.3 12.0 0.3 1 23 284 307 284 307 0.96

3 12 0.00015 0.015 16.1 3.1 2 23 320 342 319 342 0.96

4 12 0.069 6.8 7.7 2.3 3 23 355 375 355 375 0.98

5 12 9.4e-08 9.3e-06 26.2 1.5 2 23 413 434 412 434 0.97

6 12 0.0068 0.67 10.9 0.4 1 23 439 462 439 462 0.91

7 12 0.17 17 6.5 2.0 2 23 536 557 536 557 0.98

8 12 0.00069 0.068 14.0 1.0 1 23 566 588 566 588 0.95

9 12 1.5e-05 0.0015 19.2 2.9 2 23 596 617 596 617 0.96

10 12 0.015 1.5 9.8 4.6 1 21 623 643 623 644 0.95

11 12 0.17 17 6.5 0.0 1 23 758 781 758 781 0.97

12 12 4e-07 4e-05 24.2 6.4 1 23 786 809 786 809 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.091	9	7.4	0.5	3	21	259	277	259	278	0.87
2	12	0.003	0.3	12.0	0.3	1	23	284	307	284	307	0.96
3	12	0.00015	0.015	16.1	3.1	2	23	320	342	319	342	0.96
4	12	0.069	6.8	7.7	2.3	3	23	355	375	355	375	0.98
5	12	9.4e-08	9.3e-06	26.2	1.5	2	23	413	434	412	434	0.97
6	12	0.0068	0.67	10.9	0.4	1	23	439	462	439	462	0.91
7	12	0.17	17	6.5	2.0	2	23	536	557	536	557	0.98
8	12	0.00069	0.068	14.0	1.0	1	23	566	588	566	588	0.95
9	12	1.5e-05	0.0015	19.2	2.9	2	23	596	617	596	617	0.96
10	12	0.015	1.5	9.8	4.6	1	21	623	643	623	644	0.95
11	12	0.17	17	6.5	0.0	1	23	758	781	758	781	0.97
12	12	4e-07	4e-05	24.2	6.4	1	23	786	809	786	809	0.98

Sequence Information

Coding Sequence: ATGTCGGTATCAGAGTGGGACAATTCGTGCAGGCTGTGCGCCGAGGAGCAATCCGAGATGTTTTCGATTTTCGGGGAAGAGGGCCTCAGGCGAAAAGTAGCTCATAAGCTTCGAGTCTGTTTGCCGATTATGGTGTACAAAACTGATCCATTGcccaaaaaaatttgtcaattttgcGCTGCGAGACTCGACGACGTTTACGAGTTCAGGGAATACTGTCTGAGTGTTTACAAGAGCATGCATCGTAAGCTACTGAGCCTGAAAGATTTCAAAACCGTTCAGATATATCTGGATGCCATGAAAAATTCGCCCGATCCTTGTCAAGTACAGTTGTGTAAGGAAAAAGCTCGTGCACCGCCGCCTTTGGTGCCTTTGCCATCTTCACTACCGATGATGAAATTAGCCGCGATTGATGCATCAATGCCGCCGAATGTTTGTCCGGAGACATTAACGGAATTGCCCTGCGAGGTTGAAATAAAAGAGGATCCCAATGATACGGGGTTTAAATCCGATTTCGCGCTCGATAGAGCTGGATCCAATCGTCGTGATACGTCGACTCCGAATTCTCGTGAGAACAAGACTGAGAAAATGAATGAGAATGATATAATCGTTCTTGATGATAGTTTCACAGAGGAGCCCGAAGCATCGGATAACGAGATGGATAAAAGGGAGGAGAAACCAACGAGTATATTGGAGCAAGTATTAACCGGTAATTTGACGATCAACGACTGCAAGGAATTGACGCCCAGACCGAAACTTAGTTCGCAATGGTGGTGCTCGCCTTGCAACAGTTATTATCGAACTAAAAGTAGTTTGATGAAGCACATGCAGCTGTTTTGTCCGCGAAAGTATACCTGCTCAAAGTGTTCTCTGGTATTTCAAACGGTCCAGGAGCTCGCTAAACACGAAGCGACGAATCATTTGAAGGTCACATTTGACTTTGATGAATCGGTCAAGGAGTGTCATCAGTGCGATCGAGAATTCGTTAGCTGGGAGATGCTCAGGCATCATCGACTCCGCGATCACATTGCCGAATCCATGGAAATTGGTACAAACACATGGTGTCCGCTTTGCAACAGattttttcccaCCATGGAACTCTACTGCAGTCACAAACAGCTTCACGATGCCGGAACAACGATGCCCGAAGCAACGATACAGAGTGAAACGACTCAACAGATTCACGATGGTAATGAAACGAAGAGGGAACATTTTATCGAAAGCGTGAAATCGCTCACCTGTCCGACCTGCGGAAAGGTGTGCACCCAACAAAGTGCCTTATCGAATCACATGCGTACCCACGAGCCTAAGAAACATAAGTGCGAAATTTGCGGTCGTTCGTTCGGTCTTTTCATACGTCTGGCAGCTCACAGGCTCAGCGAGCACGGACAGCAGCCGATTATGTCACCGATAACGGCGAGTGTCGAGCAGGAAGAGGCACTCAACGCTCAGAGAGAGGCGAGAGAGGCTCGCGTCGGAAAAAAGCCGAAAAGCCGAAGTCGAAAATTGTCAGAGATATTGGACAACGACGGAGTCTCGACGAAGGAGCAGCCAGCCGCGAAAAGAAAGGCTCATGAGAATGCAAACGCATCGAGGAACGTAGCCCGTTGTGGAATTTGCCAGCAATGGTTCACCGATCACACGACCATGCTAACTCATCTACAGACGCATTCCGACACCCTGACGTCCAAGAGTTTCAGCTGCGGAGTGTGCAAGAAATCGTTCAAGGAAAAATGGCAAATGAGCAGACACGAGGTGTCTCACAAACGTGGCAAGACCGGCAATACGTGCAAAATCTGCAAGAAATGTTTCGCTGACAAGAGCCAGCTAAAGATTCACGAGACTGTACACGCGTTGAACAAAACTTATCATTGCCCAAAGtgtaacaaaatatttttcaaagaattttcacTGATGACGCATCAGTGCAACGGCACGCCTGTTTTCGTCAAGAGAAATTCGACGAACGTCAAGAATGCGCGCAAGGCGTCGTTCGCACCGAGCGAAGGCACGAAAAAACGCAAGATTTCCAAGGATCAAGTAACCGTTGGCAATTCAAAGTCGAGAAACAGCCGCACGCGCGTAGCTTCCGTGGACAGTACCAAGTCGCGAAACGATACTTGTCCGGTGAAATTGGACAACGACTCGATGCCAAAACTGAAGCCGGAACATTCGCCGGGGACGTCGATGCTGGAGCCGAAAGTCGAGATTAACGAGAAGGATAGCGTCCCGGCTCCCGTCAAAAGGACCCTCATCAGAACAGCCGGCGGATATCGTTGTGGTGTTTGTCAGTCTCCGTTTGTACTGCGTGAACTCGCTGTGGCACATCTTCGCTCGGCTCATCCAATGATGCCTTATCAATGTCCATATTGCAAAAAACGCTTTACAACGCAATACACCTTTACGCATCATATGAAAACCGATCATCCCGACGAATCGGAAAAATAA
Protein Sequence: MSVSEWDNSCRLCAEEQSEMFSIFGEEGLRRKVAHKLRVCLPIMVYKTDPLPKKICQFCAARLDDVYEFREYCLSVYKSMHRKLLSLKDFKTVQIYLDAMKNSPDPCQVQLCKEKARAPPPLVPLPSSLPMMKLAAIDASMPPNVCPETLTELPCEVEIKEDPNDTGFKSDFALDRAGSNRRDTSTPNSRENKTEKMNENDIIVLDDSFTEEPEASDNEMDKREEKPTSILEQVLTGNLTINDCKELTPRPKLSSQWWCSPCNSYYRTKSSLMKHMQLFCPRKYTCSKCSLVFQTVQELAKHEATNHLKVTFDFDESVKECHQCDREFVSWEMLRHHRLRDHIAESMEIGTNTWCPLCNRFFPTMELYCSHKQLHDAGTTMPEATIQSETTQQIHDGNETKREHFIESVKSLTCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHRLSEHGQQPIMSPITASVEQEEALNAQREAREARVGKKPKSRSRKLSEILDNDGVSTKEQPAAKRKAHENANASRNVARCGICQQWFTDHTTMLTHLQTHSDTLTSKSFSCGVCKKSFKEKWQMSRHEVSHKRGKTGNTCKICKKCFADKSQLKIHETVHALNKTYHCPKCNKIFFKEFSLMTHQCNGTPVFVKRNSTNVKNARKASFAPSEGTKKRKISKDQVTVGNSKSRNSRTRVASVDSTKSRNDTCPVKLDNDSMPKLKPEHSPGTSMLEPKVEINEKDSVPAPVKRTLIRTAGGYRCGVCQSPFVLRELAVAHLRSAHPMMPYQCPYCKKRFTTQYTFTHHMKTDHPDESEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01129574;
90% Identity: -
80% Identity: -