Rexs016467.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- -
- Assembly
- GCA_963564615.1
- Location
- OY751319.1:23136538-23140613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.8 1.7e+02 3.3 4.1 2 23 251 273 250 273 0.96 2 20 0.39 38 5.4 4.2 1 23 355 377 355 377 0.98 3 20 0.0047 0.47 11.4 0.6 1 23 426 448 426 448 0.98 4 20 0.0062 0.62 11.0 1.1 1 20 511 530 511 532 0.94 5 20 3.3 3.2e+02 2.5 1.0 1 10 544 553 544 567 0.77 6 20 1.5 1.5e+02 3.5 3.6 3 23 574 593 572 593 0.84 7 20 1.1 1.1e+02 3.9 5.4 1 23 616 639 616 640 0.88 8 20 0.00054 0.054 14.4 0.1 1 23 644 666 644 666 0.97 9 20 2.1e-08 2.1e-06 28.3 0.5 2 23 733 755 732 755 0.97 10 20 0.013 1.3 10.0 0.6 1 23 761 784 761 784 0.95 11 20 0.00051 0.05 14.4 0.1 3 23 794 815 793 815 0.97 12 20 0.00019 0.019 15.8 0.6 3 23 825 845 823 845 0.92 13 20 7.4 7.3e+02 1.4 0.1 2 20 900 918 899 918 0.86 14 20 0.44 44 5.2 0.1 2 23 938 959 937 959 0.96 15 20 7.9e-06 0.00078 20.1 1.4 2 23 977 998 977 998 0.98 16 20 0.00054 0.053 14.4 0.3 1 23 1021 1044 1021 1044 0.95 17 20 0.07 6.9 7.7 0.5 3 23 1100 1121 1098 1121 0.95 18 20 0.37 36 5.5 0.4 2 23 1142 1164 1141 1164 0.92 19 20 0.0099 0.98 10.4 1.0 1 23 1176 1200 1176 1200 0.98 20 20 0.0031 0.31 12.0 0.1 2 23 1259 1281 1259 1281 0.96
Sequence Information
- Coding Sequence
- ATGAATGAGATCGTTGATACGCAAGATTTGGGAAACTTGTGCAGATTGTGTCTGTCGACGAAGGAACCGAGATCATCGGTGTTTGGCGATCAGGCATCCGGCACGGTTACGCTGTTGACTAAAATCCAAACTTGCTTATCAATCGAGATTCTAACCAGCGACAAAGTATCCACGTCGATATGTTCAAAGTGTCTGAGGAGGATCAGCAAATGGCACGCTTACAAGCAATATTGTTTGTGCTCTCAGGAAAAGTTGCAGAAATGTCTCGACGGACGATCCAACGACGTACGAAGTATCAAGGTAGAACCGATGGATTTGCAAGAGGCGACGAGCGAATTTGAGACGGTCGCGTCGAGCAGCTCGAACGACGAGTCCGTGATACCCGACGAATCGATGGTGAAAAATCGCGATGACAAAGCCGTAACGAATTGCGCCAAGGCGATAAAGAGAGAAGCGGCGGATAATCAGGTCGAAGGAGGccacgaggaggaggaggaggaggatgacgacgaagacgacgacgacgacgacgacgacgacggtggGAATGCGATCGAGATAGAATCGGTGGGTAGCACGGAACTGCTGTTGAATCCTATGGCCCTGGGGGGAGAAAAAGTCGACAGACTCATGGAGGCGGATTCGACCCAAAAGTCAAGCAACGTCGTTTCATCGGCAAGAGCGGGTATTAAGAAAAAAGTAAGACGCGGACCGCAGACTCACTACAGAGGCTTGCGCCGATACAAACAGAGATGCTCCTACTGCCAGATTTATCTCCACTCCAAGTTTAGTTATTCCAAGCACATGGAACGATTTCACAGCGGCAAGATTTACGTGAGAAAGGCGCGAGTCGTAAAGCCGTCGACGATCGTCATCGAGGATGAGAAGGATAAtttggaggaggaggaggaggaggaggaggcggcCGCAGGAGCAGGAGCGTCGCAGGAAATGATAGTCGACGCGGAGATGATAGAGGACGTGGAGGACGAATTGATAAGCCTGGAAAAGGATGCGCCTCTAACGCCTGTGCAGCAAAACATAATAAGCCAATTGAAAACTTTCTCGTGCTACACGTGTCGTCTGTGCTTCGGCGATCGTCGCAGTACACTGAATCACATACGCCAGCATATGCCCGATCTGAGACCCTACACCTGCATAGCCTGCCTCACGGAATTTGCCGATCGTTCGATCTACAAGCTACACTGCGGCGCATCGTTTCAATGCGCCATGAAGATAGCCCTCGTCGTGCCGAAACACGGTACGGAAAAATATTTCACGTGCAACATGTGCCTGAGATCGTTGGCCGATAGAAAAGAGCTGCTGAGCCATTTGTCGCGACATTCCGACAAACAGTACGAGCAATTGATCACCGCACCGTTCTCATCGCCCTCGTGGCTCAAGCCTCAATTATCGGCAATAACATCGGCCTCTGTACAGCAAAACCGAAGTAAAAATCGTATTTCCATGAAGAATAATCGTAATGGAAAAATACCGGCGCCATACGACAATGGCAATCCGGCACACAATCACGAGTGCGTTCACTGCGGTATGATTTACAAGTACAAGCAAAATATGACCAAGCACGTGTCGTTGTGCAAAAAATTGCCATACGAGAGTCGAATATGCTACAGATGCGTGAATTGCGGCATGACGTTTCTCGctttcaataaatttcatacCCACGTTAGCGTCGAACACAAGACGAACGATATTTTTTGTCATCGTTGCAATTTAAAATTCAAGTCGAACGATTTTTTGTCACATTATCGGGGCCATTATGCCGATAAAATATTGGACATTGTCGTATCATCGAAGGCCGATGCTAAATCAGCGCAGAGCGGATTTAGCTGCGCGATGTGCCCAAAGAGCTCTTATCCGACGCAATGTCATCTCACGGAGCACAGGAGAATTCATCATCCAAAAATATATGCTTGCAATATTTGCGACTGCACGTTTGTCAAAGCTTCGATTCTCGAGGCACACATGGCTGTTCACGTGAAcaacgacgaggacgacgacgattGCGACGACGGCTACGACAATGAGAATGGGATTAACGTCGAAGCGAATAAGAATCGATTATCAATTAAATCGGATCCCGGTGGGGAAAGAACGAGGACGAGAACGAtaaggagaaagaggagaagCAACAGCaactgcagcagcagcagcagtagcagcaacAATACGACCGAGTGCAACGATTGCGGCAAAGTATttgcaaattataaaaatttgcgaCGTCACATACGTACGGTGCACGATGCGGTGGGTCGTTTCAGCTGTTTCACGTGCGCCAAGACATTCGTAAGGGAACAACAATGGACGGAGCACGTTGAGAAGGAGCACAAACGTGACGCCGAGCGCGTAGAAAATTGTCCCCAATGCCCCGAGATATTCGAGAGTCAGCAAGAATTAATTCTTCATCGTCGCAGCGTTCACGGATTGAACGGTGAGGATCATCTCGCATGTTACATATGCGGCAAAAGTTTTGCCAACGAGACATCACTTAAGATTCATCGCGGTCATCACTTTCGCGTTAATTCGAGGCTCAGTATCGGCAATGGAAGGAGCGAGTCGGGTGCAACGACCGTGACGATAAGAACGGATGAGCACGAGCGTCAACGGGCCGTAAAATCACCGAGAGCCAGAAAATCATTTCCAAACTCAGCGAGTACGATCAGGCAATTGCTGCAGTGTCAGGTTTGCGATGATCGATTCAACGACGTCGCAATTCTTCGCAAGCACCTCTGGGACGTTCATTGCGCCCGTAACAAGCccgaaaaatcatttatatcGGAGAAATTGCAGTGCGAGCTTTGCACAAATGTATTGCCCGACGAGGAGAGCTTCGATAGTCACATGAAGTGGCACGAGAGCAATCCTATTCTAAGCAACGGTCAGAAGCGCGAGGCTACTAGGGCGCAATGCGATCTTTGCGGCAAATTTTACAGCTCCGCTGCGAATCTTCGAAAGCACAAGAAACGTCACAAGACCGCGAGTCTGCTCGTGAACAAAGTTCATTCGGGCGTGACGATTAATAAATCGTCGTACGGCTTCGCGTGCAACGTTTGTCGCAAGGTATTCGCCGAAAGATCGACGATGATGAAGCACAGAGCCATGGCTCATGGCCCGGCGAAACGTCAGAATTGTCCCGTTGGTCCGCGTCAAACTTTCGTCAAGCCGGAAGTCATGATAAAGCCCGTACGACCGGAACTCGATTTTGACGCTCTAACGAATCGCGAGATTTTCTCAATCGGCGCAAATCCCGAGACCGCTAAAGCCATCGTTTGTTGCAATCTTTGCCGAAAAATTTTGCCTGACGCGCGAGCTCTGTACAAACATCGTCAGATCGTTCACAAAATAACGAACGAGACGATGGACATGAATTTTAAGCTCGACGATTCCGTAAATCAAGTAACGTGTACCGCGTGTACGAAATTATTCAGCAGCGTTGCCAATATGAGAATACACTTTACAAAAGTTCATGCCGCTGCCGCTGCTGCTAATCGATCTGTGCAGTATCGATGCTCTATCGATGGCTGCAAGCTCACTTTCAAGACACTCGTTGCCAAACAGAAACACGAAAAAACACACGCAAACGTAATGTATACGTGCGCTCTGTGTCCCCGTCATATGCTAAATCCTGCCGCAATGGCCGAGCACATGCTTAACGCTCACAAAACCAATTATTCATCGGGCTACAACAAAATGATGCTCTGCAAGAAAATCGATCTTGACAAATATGTCGTTAAAGGAGCCAATGGAAGACAGTGTCCCGTTTGCAGAATCACTTATCCAAACTACAAGGCTCTCAAAGTGCACTATCTAAAGGTACACGAAGAGGCTTAG
- Protein Sequence
- MNEIVDTQDLGNLCRLCLSTKEPRSSVFGDQASGTVTLLTKIQTCLSIEILTSDKVSTSICSKCLRRISKWHAYKQYCLCSQEKLQKCLDGRSNDVRSIKVEPMDLQEATSEFETVASSSSNDESVIPDESMVKNRDDKAVTNCAKAIKREAADNQVEGGHEEEEEEDDDEDDDDDDDDDGGNAIEIESVGSTELLLNPMALGGEKVDRLMEADSTQKSSNVVSSARAGIKKKVRRGPQTHYRGLRRYKQRCSYCQIYLHSKFSYSKHMERFHSGKIYVRKARVVKPSTIVIEDEKDNLEEEEEEEEAAAGAGASQEMIVDAEMIEDVEDELISLEKDAPLTPVQQNIISQLKTFSCYTCRLCFGDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSIYKLHCGASFQCAMKIALVVPKHGTEKYFTCNMCLRSLADRKELLSHLSRHSDKQYEQLITAPFSSPSWLKPQLSAITSASVQQNRSKNRISMKNNRNGKIPAPYDNGNPAHNHECVHCGMIYKYKQNMTKHVSLCKKLPYESRICYRCVNCGMTFLAFNKFHTHVSVEHKTNDIFCHRCNLKFKSNDFLSHYRGHYADKILDIVVSSKADAKSAQSGFSCAMCPKSSYPTQCHLTEHRRIHHPKIYACNICDCTFVKASILEAHMAVHVNNDEDDDDCDDGYDNENGINVEANKNRLSIKSDPGGERTRTRTIRRKRRSNSNCSSSSSSSNNTTECNDCGKVFANYKNLRRHIRTVHDAVGRFSCFTCAKTFVREQQWTEHVEKEHKRDAERVENCPQCPEIFESQQELILHRRSVHGLNGEDHLACYICGKSFANETSLKIHRGHHFRVNSRLSIGNGRSESGATTVTIRTDEHERQRAVKSPRARKSFPNSASTIRQLLQCQVCDDRFNDVAILRKHLWDVHCARNKPEKSFISEKLQCELCTNVLPDEESFDSHMKWHESNPILSNGQKREATRAQCDLCGKFYSSAANLRKHKKRHKTASLLVNKVHSGVTINKSSYGFACNVCRKVFAERSTMMKHRAMAHGPAKRQNCPVGPRQTFVKPEVMIKPVRPELDFDALTNREIFSIGANPETAKAIVCCNLCRKILPDARALYKHRQIVHKITNETMDMNFKLDDSVNQVTCTACTKLFSSVANMRIHFTKVHAAAAAANRSVQYRCSIDGCKLTFKTLVAKQKHEKTHANVMYTCALCPRHMLNPAAMAEHMLNAHKTNYSSGYNKMMLCKKIDLDKYVVKGANGRQCPVCRITYPNYKALKVHYLKVHEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -