Rexs000983.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- -
- Assembly
- GCA_963564615.1
- Location
- OY751313.1:17279560-17288552[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 11 7.1 4.4 1 23 47 69 47 69 0.98 2 13 0.00086 0.085 13.7 4.2 1 23 235 257 235 257 0.99 3 13 2e-07 2e-05 25.1 0.4 1 23 263 285 263 285 0.98 4 13 0.0017 0.17 12.8 1.2 1 23 310 333 310 333 0.96 5 13 0.36 35 5.5 0.4 1 23 339 363 339 363 0.95 6 13 4.5e-06 0.00045 20.9 0.8 1 23 368 390 368 390 0.98 7 13 0.005 0.49 11.3 3.3 1 23 402 426 401 426 0.88 8 13 0.0018 0.18 12.7 3.7 1 23 428 450 428 450 0.96 9 13 6.8e-06 0.00067 20.3 0.2 1 23 456 478 456 478 0.96 10 13 5.1e-05 0.005 17.6 0.5 1 23 484 506 484 506 0.97 11 13 0.0002 0.02 15.7 0.6 1 23 512 539 512 539 0.97 12 13 0.017 1.7 9.7 6.2 1 23 545 568 545 568 0.93 13 13 0.0091 0.9 10.5 3.0 2 19 571 588 570 590 0.94
Sequence Information
- Coding Sequence
- ATGGCCCAATCCATATTATTCGATGCCCTGACAGGCGTATCGCTGGATAATAGTTCTACGGTGCAATCTCTGCTCGAATCACCGACGCTTATAAGCGAGGTGGAGCAGTCGGCTATAGACCAAGACGAGGAGGATATTTTTCAATGCGGCAAGTGCAAAAGTCAATTTACATCTTTGCACATGTTTCTCCTGCACAAGAGAGAACATCTGAAAGTACAAGAGGAAACCGTAGATCTGAGCCAATATTTGGTGAGCGAAGACGCTACGGTCAGCGTAAGCGGGGAAGATCCGTGCCAGAATGGAATTCAGTACGATCCTCAAGGGGGATTCGTTCGGACCGATCAGCTCGCAGAGTCCATCATACTGGAGGAAACGGACATGCTGTTCAgTATGGATCAAGAAGGGGCAAATTATTTGACTCAAGATTCTGGTTTCGGAGTGCCTATTATTCTCAGCGCGGAAACTCTCGAAGATGCTTTCTCGGATCCGGCTGAAAATACGGAAGGCGACAATCTGATGAATGAAAATGACGAGGTGCGTCAGGCATTGCGGAGCGATCTCAATCGTGACGAGGCCGTATTCGATGTCTCGTCGAATCACGATATCGTACCGATGGACAATGGATTGGAAAATATTATCGAGAATCACGATGAACAGACGGAAGAGGGGGACGTCAACGTTGGTCAAACGCAAAATTTAAagTACAAGTGTAGCTATTGCTACAAGCAATTTGCCAAGAAATTTTATTGGCAGCAACACGAGCGTTCGCACACGGGTGAGAAGCCCTATCAGTGCGTAGTCTGCGGCAGGGCATTCGCCCAGAAATCCAACGTCAAGAAGCACATGTCCTCGCACAAAGTATGGCCAGGAACGGCGATACACTCTTTGCCACCggaaGCACCCCCGGACGGAAGTATCGATCGTACCTATCATTGTCAATTCTGCAAAGAGATCTTTGACTCGTACAAAGCCCTCAAGGCTCACCTGATAGTCTCTCATCTGACGCTCAAAGTTTACAAATGCGTTCAAAGCAGCTGCAGCATGATGTTCGCCGAGCTGGACGATTTTCTCGAGCACACGAAGAGCCACAAGCGCTCCGAGTATCGCTGTCACGTTTGCGGCGAGGTCTTCAACACCCTTTCGGATCTTGGACTTCATCAGTACACGCATTCAGTTCAGAATCAAAAAACAACGGAAAAGTATTATTGCTGCGCTATATGCAAATCATCGTTTTCCAATCTCGAGGCCCTGCAGCATCACACGGAGACGACGACCCACGATCACGCCTGTCCTCACTGTGGCAAGAGCTTTTTGATCGAAAGATTTTTGCGCAGGCATCTCAAGACTCACGTCTCATCGGCTCGTTTCGCCTGCGAGGACTGCGGCAAAGCCTTCAAGACCGAGCAATATCTTGCGAATCACAAATTGATACACAGCGACGAAACACCGTTCATATGTCCGCAATGTTCTGCAAGATTCAAGAGAAAAGATCGTCTCGGACGTCACATGCTCATTCACGATTTAACGAAGAGGTTCAAGTGTCCGTTTCGTGCTTATTTGGGCTGCACGAGCGAATTCTCACGTCCGGACAAGCTCAAGAGGCATCTCCTGACTCACAGTAACGTCAAGCGTTTCAGCTGCAGCCACTGCAATCGCAATTTTCATCGGGCCCAAGCACTCATGCATCACGAGCTCAACAAGCACAATCTAAAGTGCGACAATTGCTCGCAcGCGTTTAAAACGAAGGAACAATTGATAACGCACAATTGCGACGATCAGACGATCGATACGAAGAAACACGCGAGCTCGCAACTTCCGAAGAAAGCTTCCGGAACGTTCAAGCCACGAAAACCAACGCCAAAGAGACAAATGAAATCGGCGAGCGTtatcggggataaggaaaaatcAAAATCCGACGAAATACAGAAAAAAGTAATATTGGAAGATACGAGAATGATCGTTCACGAGGAAGAAAAGCACGAGAAGagagttgaaaattttacaacaaCTCGGGAAATTGGCTCGACGATCGACGCTCTGATGATttcggactcgtcgaattcCAACGATAACATACCCCCGATCACTGTATTCTGGTCCGAGCTACGAATCGACGATGTCGCGTAA
- Protein Sequence
- MAQSILFDALTGVSLDNSSTVQSLLESPTLISEVEQSAIDQDEEDIFQCGKCKSQFTSLHMFLLHKREHLKVQEETVDLSQYLVSEDATVSVSGEDPCQNGIQYDPQGGFVRTDQLAESIILEETDMLFSMDQEGANYLTQDSGFGVPIILSAETLEDAFSDPAENTEGDNLMNENDEVRQALRSDLNRDEAVFDVSSNHDIVPMDNGLENIIENHDEQTEEGDVNVGQTQNLKYKCSYCYKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKEIFDSYKALKAHLIVSHLTLKVYKCVQSSCSMMFAELDDFLEHTKSHKRSEYRCHVCGEVFNTLSDLGLHQYTHSVQNQKTTEKYYCCAICKSSFSNLEALQHHTETTTHDHACPHCGKSFLIERFLRRHLKTHVSSARFACEDCGKAFKTEQYLANHKLIHSDETPFICPQCSARFKRKDRLGRHMLIHDLTKRFKCPFRAYLGCTSEFSRPDKLKRHLLTHSNVKRFSCSHCNRNFHRAQALMHHELNKHNLKCDNCSHAFKTKEQLITHNCDDQTIDTKKHASSQLPKKASGTFKPRKPTPKRQMKSASVIGDKEKSKSDEIQKKVILEDTRMIVHEEEKHEKRVENFTTTREIGSTIDALMISDSSNSNDNIPPITVFWSELRIDDVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00798763;
- 90% Identity
- -
- 80% Identity
- -