Rexs016346.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- -
- Assembly
- GCA_963564615.1
- Location
- OY751319.1:21218539-21221208[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0013 0.13 13.2 1.9 2 20 141 159 140 162 0.95 2 13 0.0013 0.13 13.1 4.0 1 23 168 191 168 191 0.93 3 13 4e-05 0.0039 17.9 3.2 1 23 197 219 197 219 0.98 4 13 0.00012 0.012 16.4 0.1 1 23 361 383 361 383 0.96 5 13 5.6e-05 0.0055 17.5 0.5 2 21 393 412 392 413 0.93 6 13 0.00029 0.029 15.2 2.1 1 20 435 454 435 457 0.92 7 13 0.0036 0.35 11.8 0.4 1 23 462 485 462 485 0.95 8 13 6e-06 0.00059 20.5 0.8 1 23 491 513 491 513 0.98 9 13 0.0022 0.21 12.5 6.3 1 23 520 542 520 542 0.98 10 13 0.00037 0.037 14.9 0.4 3 23 550 570 548 570 0.97 11 13 0.00014 0.014 16.2 0.2 1 23 576 599 576 599 0.96 12 13 0.45 45 5.2 0.1 1 23 613 635 613 635 0.90 13 13 0.058 5.8 8.0 0.0 2 23 867 888 866 888 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTCACGAAAGCGAGTACGAGTTCCCGATTAGCGAAACGATTCAAGACGGCGTTGTGTCGCACGAGGAGATATGCGAGCCGAACGACGATTGCATACTCCCCGAGAGTCTTGCTCGAGTCGTCGTTGACATAAGCGCGGTAATGACGCAGTCGGAAGCATCGGTCGAAATAATGGCCGAGCGAtcggacgatgacgatgacaaaGCGATATATCCGATTTACATAAAGCAGGAGGAACAGCACAATTATACGTCGGGCGATGACGAGTCAATGGCGGTCGAGGCGTTGCGTCAATTGGGTAGCGGTATTTATCCGTCAtacgagacgaaaaaaatattgtgccAGAGATGCGATTCTATCGTTGAACAATCCGAATTCGCTGAGCATCGCGAGAAATGCGCGATCGGCAAGCTACGCTGTCCAACCTGCCGTGAGTCGTTCGAGAGAAAGCAAGATCTCAGCAATCACATGGTTTGCCATCAGGTCGATCGACCCCACGCCTGTCGCACCTGCGGCAATCTATTTCGCTCGAAATCTCATCTTCAGACGCACATGTCGCAGATACATCGAGCCTCGAAGCCCCACAAATGTACGATATGCGGCTCGGACTTTCATCGTCCGTCGAGCCTCTCCAATCACATGAAGATTCATACTTACGTAGCTGGCCGAGCTCTGCTGCAGTCCGCGACTACCGGCACGATCCAATCGAATCCTGAGACATTGAGCGAAAAATGGACGGAAGAAACGGCCAATAATGCCGAAACGACGAGCTACGACGTGCAGTGGTCGGTGCCTTATAACTTTGATCCGAGCGTCGAGACGATAACCGACACCGGCGATAAGATCGACGGTCTTGCGGAATTCACGGTCATGCCGAACGGCGAGGTGACTCATTACGAGTATCCGACTCAGGATCCATTGGCAATTGTCACGGCCGATCGTTACAGCACCGTTGATCCTGACAATTTGCAAAGCACCGAAGCATCCAACGTTAAACTCGAGTCGTTGTCCTTTGCGCCTGCCGACCCGAGGAATTATCCCGAGATTCGCATCAACGACGCGGCCCCAAAGATTCACAATTGCACGGATTGCGGTGCGAGTTTCGGTAGACCGGCTGCGCTTGCCTCGCATGCCAAGATTCACGCGACCAAGCTCTGGTCGTTGCCGATCGAGTGCGAATATTGCGACAAACAGTTTCAGGATTCGGCTCATCTGACGAATCATCAGACGACATGCTCGAGAAAACTCATGCGGTGCAGTCTCGTCGATGGCACGGCAAATGGTAAATGGGGAAAGCACGCTTGCGGCGATTGCGGCAAAAAATTTACCACCAAACAGAAGATGTTTCGCCATCAGTGGATACATCGAAAGAAGACGCACAGCTGTGAGATTTGCGGCGTACAATTTGAGAAACAGAATGAATTGGACGAGCATCGTTTGTCCGAGCATCCGGGCGATTCGCCGTTCACGTGCGCCGAATGCGGCAAATGTTTCGTCTCGCGTCAGGGACTCTGGGAACACGGTAGAACTCACGCCGGTAGCCCGGCTCATTTTCACTGCGACACCTGCTCCAAGACATTCTCGTCCCGTCAGGGCTATCTGATACATCATCGTACGCACACGGGTGAACGGCCCTACGGTTGTAAATTTTGCTGGAAAGCTTTTCGCGACGGTGGCACACTGAGAAAACACGAGCGCATACACACCGGTGAACGTCCTCATGTATGTCCAATTTGTTCACGCGCGTTCAATCAAAAGGTCGTACTGCGCGAGCACGTTAGATGGGTTCATGCAGCTGGTAAGAACGAGACCGAGGCGGTCGGTCCGCCCTATCCTTGTCCAATTTGCGGCTCGCTTAATCAGGATCGCGACGAGCTGTGCGCTCATATCGTCAAGCATTCGGATCAAATGATAGCCGAGGCCAAGGCGAGGAACAACGACGGCGCAACGAAGATTGCCAaaggaggaggaagaaaaaagagcCGGATCAGCAGCTCCGCGAGATCGCTCGAGGAAGTCACGGGGAGTACGATCACGAGGAACGAGGAGACCGAAGCGTTGCTGTCCATAGCTGAGAACAGGGATGAAGAGGAAATGGTTGGACAGAGCCGGGAGATTGACGAACGGATGCTCGTTATCGGTGATGACAGGGAGATCGAGGAGATGGAGAGCTCGCAGGATGACAGGATGAACGATCGGGATATCGTGATAACCGGTTCAACGCCAATCATAACGAAGATACGACAGAGCGATGTTCTCGAGCTGATGAACAATTCGAAGAGACAGGAGAGTTTGCGTATCGTTGCTACGGGTGGAGCCGCCGGCAATACGCTTCATCTTATAACGAAGCATAATCAATCGTTGCCGGTACTGGCAATACGAAATCCCCAGAGTCATGAGAATTTTTCCAGCCAAATGGCCGATGTCGGCGAAACACGGGAATCCGGGGATAACGATGATATGGTGGATGATAGCTTGCGAGCCGAGTGTGTTATCAACGACGAGACGGGTCATCCGAATATCGCTGAGGTTGCCTCGTATCTTCGGGAGGAGCGAGAGAGCAACGACGAGGAGAACGAGAACGAGGAAATGGTCTGCGGAATATGCGGCGATGATTTCAATGACAAAAATGTTCTCATGGAACACGTCAAGATTCACATATAA
- Protein Sequence
- MEAHESEYEFPISETIQDGVVSHEEICEPNDDCILPESLARVVVDISAVMTQSEASVEIMAERSDDDDDKAIYPIYIKQEEQHNYTSGDDESMAVEALRQLGSGIYPSYETKKILCQRCDSIVEQSEFAEHREKCAIGKLRCPTCRESFERKQDLSNHMVCHQVDRPHACRTCGNLFRSKSHLQTHMSQIHRASKPHKCTICGSDFHRPSSLSNHMKIHTYVAGRALLQSATTGTIQSNPETLSEKWTEETANNAETTSYDVQWSVPYNFDPSVETITDTGDKIDGLAEFTVMPNGEVTHYEYPTQDPLAIVTADRYSTVDPDNLQSTEASNVKLESLSFAPADPRNYPEIRINDAAPKIHNCTDCGASFGRPAALASHAKIHATKLWSLPIECEYCDKQFQDSAHLTNHQTTCSRKLMRCSLVDGTANGKWGKHACGDCGKKFTTKQKMFRHQWIHRKKTHSCEICGVQFEKQNELDEHRLSEHPGDSPFTCAECGKCFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPICSRAFNQKVVLREHVRWVHAAGKNETEAVGPPYPCPICGSLNQDRDELCAHIVKHSDQMIAEAKARNNDGATKIAKGGGRKKSRISSSARSLEEVTGSTITRNEETEALLSIAENRDEEEMVGQSREIDERMLVIGDDREIEEMESSQDDRMNDRDIVITGSTPIITKIRQSDVLELMNNSKRQESLRIVATGGAAGNTLHLITKHNQSLPVLAIRNPQSHENFSSQMADVGETRESGDNDDMVDDSLRAECVINDETGHPNIAEVASYLREERESNDEENENEEMVCGICGDDFNDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -