Rexs014204.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- -
- Assembly
- GCA_963564615.1
- Location
- OY751318.1:13922089-13925067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.04 3.9 8.5 0.3 3 21 8 27 6 28 0.85 2 14 6 5.9e+02 1.6 0.0 2 20 34 52 33 54 0.90 3 14 0.6 60 4.8 0.3 1 12 213 224 213 233 0.88 4 14 0.013 1.3 10.0 1.3 1 23 416 438 416 438 0.98 5 14 0.00083 0.082 13.8 0.1 2 23 442 463 441 463 0.97 6 14 0.0017 0.17 12.8 3.8 1 23 475 497 475 497 0.98 7 14 0.02 2 9.4 0.3 1 23 516 537 516 537 0.95 8 14 0.0009 0.089 13.7 0.0 2 23 543 564 542 564 0.95 9 14 5.5e-05 0.0054 17.5 4.8 1 23 618 640 618 640 0.99 10 14 2.4e-06 0.00023 21.8 3.7 1 23 646 668 646 668 0.96 11 14 0.00027 0.027 15.3 4.1 1 23 674 696 674 696 0.97 12 14 1.7e-06 0.00016 22.3 0.8 1 23 702 724 702 724 0.98 13 14 0.0001 0.01 16.6 0.2 1 23 728 750 728 750 0.99 14 14 0.00045 0.045 14.6 0.2 1 23 758 780 758 780 0.97
Sequence Information
- Coding Sequence
- ATGGGTGCTATGAGCCTGGTTTGTCCTATGTGCTGTGGCGAAACATTCGACAATTCTCAGTCTCTGAAATACCATTTGCTGAGCATGACTGACAATCTCTACTGTCCAAACTGTGCCGAGCGCTCGGACTCAGTTGCTGCGCTTATTCAACATCTGGATCGTTGCGGCGAGAGTCTCGAAATGATCAACGTGCAACCTGTGAGAAATTACAAAGGCATTTCCACAAATGCCCAAACGGATCGCACTCATTGTGGGTTTTTGGCAACTGTGAGCGAAGACGGTGGAATTTTTATGGTCGGAGATCCATGTGCCATGGATGGGACCAAGGAGTACGTTGTAGAGAAAGTGGACATGGATGAGGATACCGCCATCAATGATATTTTAGAGGATATGAATGAGAGAGGTGATACGAAGGGCGGCATAAATATGGAGATGCATCAGAATAGTGTGAAAAAAGAAGAGAGCTCAAGCGGGATGGCAGAGAGGGAGGCGGAACTTCCTAAGCCTGAGAACAATGCAGAAGATCAGAGTCCTGTGGAAATTGAACCCTTTGAGAATCAAGCCGATGAGGAAGCGGATGAAGCTGGACTTGTCCAAGTAAAAGAGGAATTACGCGAGGTAGAATCGGATGCTCTTTACAGTTGCAGCAGTTGCGGCATGAGTTTCAACAGCGTACTCTCTCACATAAAAGAGTATCACGACGGTCAGGAGGTAGTACTCGAAATGGCCGAGCAGCAGATGGACGATATGCCGGAAGAGGCAGGCGAGCAGCGCCGCAagggggaggaggaggaggaggaggaggaggagcaGGAAGAGGAGGAAGTTGAGAGTCCGGCAACGAGCTGTTCGCGTCTTATGGAGGAAAATTCGAGCGTTGGTTCCGGCGGTGCGCCGGAACGTTCATCCGGCGGTTTGCCGCGGCAGCGTCAAACAATGAACACTCTGAGAACCGAAGAGTGCGTAGACAGCGAGGGACGTCTCTATACGAGAAAAGTTGTGCAGATCGAAAGATTCTGGGACCGGGGGCCTAGAGCGGCGACAGGCGCCCAATCGCAATTGCAGCAGCAACAACATCAAAGGTCCTCAAAGAGTGctccgatgattgaaaaatttttctcgaatgcAGAGGGCTTGAAAATTCGAACCAAGAACCTCAAGATGATGACGGACGCTATTGCGACTTCCACAACaaccgccaccaccgccacaTCCCCATCGCACTCCGGTGTGCCCCTGAGAATGTACAGGTGCAACAAATGCCTCGAACAATTTGCCAAACTCGCAGATTTTCGTGTACATGCTTGCATTCACGGCAACGATCAGTGTGATTTGTGCGAGCAAGCTTTTGCGAGTGCCAAAGCGTTGCAGTTGCACTCGCGAATTCACGAGGCCGAGGCCGAGGGAGGAAACGACAGTAATTTCGTTTGTCAAACGTGCAGTACTGAATTCTCGTCGCACAAGAGCCTCAGACTGCATTCCAGAATGCATGCACCCGTGAGAGCGAGACATGTAGATGCACCCGAGGGGACTGCCACTGAAAATTTCACATGTGTCGAATGCGGTAAAACGCTTTCGGAATCGTATAGGAAAGCGCACATGGCACTACACAAGGGAGACTCTGTAACTTGTTCCGTTTGCAATAGAAAATTCGATTCAGCCGACAGCCTTGCTATGCATGCTGCGGTACACATGGAATTTGCGCAATCGCTGCAGAAAAAACAAGCGCAAGGGCAGTTGTTAGAGGAGCAGAGGATAGAGGATGAATCGAATGACTGCGGTGGGAAGCGCATGAGAGGAGGAAAGGAGGTAGACAAAGGCTCCAGGGTCGGAGATGCTGCGGAAAAGCCCTATCAGTGTCAGCACTGTGGAAGAAGATTCACGAGACCTCACGAGAAGGTGAAGCATGAGAGAATACACACCGGGGAGAAGCCTCATGCTTGTGAGGTTTGCGGAAAAACTTTTCGCGTCTCTTACTGTCTCACGCTACATATGAGGACTCATACGGGTGTACGTCCATATGCGTGTCAGCATTGTGGCAAAAGATTCAAGGCATCTTCCGTGTACAATCATCATTTGTTGACTCATGGTGAGGAGCGAGCGTATACATGTCCCTATTGTCCAAAGACCTTTAAAACTCGTGTGCAATTGGCTGGCCACAAAAACAGTCATACCAAGCCGTTTCGGTGCACTGAGTGTTCGCGCCCATTCGCCTCTCTATACGCGGCACGTGCCCACATTCAGACTCACAAGAAGGACAATAATTTGAAGTTCAGCTGTTACATATGCGGTGCTTCGTACGGACGAGCATTCGCACTCAAAGATCATCTCAAGCAGCATACGGGACAGGACGTTCTGATTCCACCACCGGAACCATCTCGCGAGGAGGAAGTCGCCGATGCCGATGATTTTATCATCACAGAGGAGACCGAAGAGTACGAAGAGATTGAAGAGATTGAAGAAATTGAGGAGGAGGAGCACAAGCTCGTCGAGGTTGCCACTGCTGCCGCTGCTGCCCATGTTGATATTCATTCGACTATTGTCGATCGTCACGATCGATCCGAATGA
- Protein Sequence
- MGAMSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVAALIQHLDRCGESLEMINVQPVRNYKGISTNAQTDRTHCGFLATVSEDGGIFMVGDPCAMDGTKEYVVEKVDMDEDTAINDILEDMNERGDTKGGINMEMHQNSVKKEESSSGMAEREAELPKPENNAEDQSPVEIEPFENQADEEADEAGLVQVKEELREVESDALYSCSSCGMSFNSVLSHIKEYHDGQEVVLEMAEQQMDDMPEEAGEQRRKGEEEEEEEEEQEEEEVESPATSCSRLMEENSSVGSGGAPERSSGGLPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGPRAATGAQSQLQQQQHQRSSKSAPMIEKFFSNAEGLKIRTKNLKMMTDAIATSTTTATTATSPSHSGVPLRMYRCNKCLEQFAKLADFRVHACIHGNDQCDLCEQAFASAKALQLHSRIHEAEAEGGNDSNFVCQTCSTEFSSHKSLRLHSRMHAPVRARHVDAPEGTATENFTCVECGKTLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHMEFAQSLQKKQAQGQLLEEQRIEDESNDCGGKRMRGGKEVDKGSRVGDAAEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHTGQDVLIPPPEPSREEEVADADDFIITEETEEYEEIEEIEEIEEEEHKLVEVATAAAAAHVDIHSTIVDRHDRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -