Rexs009869.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- -
- Assembly
- GCA_963564615.1
- Location
- OY751316.1:24911095-24915004[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00054 0.054 14.4 1.0 1 23 337 359 337 359 0.98 2 12 0.00072 0.071 14.0 5.3 1 23 363 385 363 385 0.98 3 12 0.00052 0.052 14.4 1.8 1 23 390 412 390 412 0.96 4 12 0.0025 0.24 12.3 3.8 1 23 476 498 476 498 0.97 5 12 2.2e-05 0.0021 18.8 4.1 1 23 503 525 503 525 0.97 6 12 0.00012 0.011 16.5 2.2 1 23 599 621 599 621 0.98 7 12 0.0062 0.61 11.0 0.9 2 23 629 650 628 650 0.97 8 12 1.1e-06 0.00011 22.8 2.1 1 23 661 683 661 683 0.96 9 12 7.2e-05 0.0071 17.1 1.0 1 23 689 711 689 711 0.98 10 12 0.0001 0.0099 16.7 0.7 1 23 717 739 717 739 0.98 11 12 5.5e-06 0.00054 20.6 2.0 1 23 745 767 745 767 0.96 12 12 9.8e-05 0.0097 16.7 0.3 1 22 773 794 773 794 0.96
Sequence Information
- Coding Sequence
- ATGGCCATGAATACGAATTATTTTGGTCCGCCTCTTAACATGGACCGGATTTGCCGTATATGCTTGCTCGAGGGTACAAACTTGACGCCGATATTCTGTACCGAGCAGGAAGTCGACGAATTTTCAGGTCTCTCGCAAAAGATTCAAGTATGCGGCTCCATCGACATACACGAGAACGATGGATTTCCTTCCTTGATATGCGACGTTTGCATCTACAAAGCCAGCATAGCGCACGAATTTCGACAGCAGTGCCAGCAGTCCGACGCTCGTCTCAGATTGCTCTACGACAAGCCAGCCGGAGCCAACATTGCCGATTCTTGTACGCAGACCGAGCCGCAAACGCGTATAATACTGACGAGCAAGATCCCGAGTCCAAGGACAACGTATTACGTGAAGCAGGAGTTACAGCCGTCGAATACGCAGGATTATGCGAGCGCGATCGAGGAATACGCGAGAAATGCCCCGACCGGGACGGTCGGTCGGGTCAGTGAGAATCCGATCGATTGTCAGGACGAGAAGATTTTTCTCTGCGACATTGGGTTCGTTGGTGCGAAAGAGATAACGGACAAGGAAGCAGAAACGTTAGCCGAGGCTGCCGCGAACGAAGCGACGGTCGTTTGTCCGATCCCACAGACGGAAATTACCGCGGGACTGTTGAGCGTCGATGAGAATGGCCGATTGGAGACGCGACGATTGATCGTTAAGAACGACGCGGAAAAGTGCAGCTCAACGGAAATCGCGGATGAATATATCAAGGAGCAGATGATGAATGAGACAACGATGGGCGAGAGCATCGCGGCTGACGAGGAGGATTTCGAGGAACAGCAGCAGGAGGAACTGCTgagacagcagcagcagctgcaGCAGCAAGAGCGAAACGAGGCGAGATCGCTGAAGCGGGCGTcgttgagaaaaattaaatcggCCTCGTACAGCGAGGATCAGATTCACGACGATGATTATTTCGCCACGGTCACCGTCGATCAGCGTTCCGATCAAAGACCAAAATACAAGTGCAGCGTATGCCTCAAGCGTTACATGACCCAAAAAGGCCTGAGAAATCATGCACAGGTACACGAGAGAAATCACAAATGTGCGATCTGTCACAAGACATTCTTCAAGCTGAAAAATATGGAGAAACACGCGAGGATACACGATACGAGGATGCACGCTTGTAAAACTTGTCACGCGAGTTTTGCGAAAATTTCGAGTCTCGCGCGTCACGCGAGGATCCACGTCGAGGCAAAATTTAACGACGATGATACGGCAAAATTGCGCGAAATTAACGAAGCTACGACGACGAGCACGATGATcgagataagaaaaaatgaCGAGCTCAGCGATCTCGGTAgcgacgaggacgacgagatTGCCGTAATGCCGGATCCTCTGACGAATGAAATCGACGAGTACGGAAATGAGCTTTACAGATGCGAGATATGCAAGCAGTATTGCTCGTCGATGAAGAATCTCAAGAGGCACAGTCTCGTGCAcggtgagaaaaaatattcgtgcaCGGTTTGTAAGAAATGTTTCTTCAGGCCCGACACGCTGAAGAGACACGCGGAAAAGCACGGTCATGGCTTGCTCGATAATATCATCGATGACGATAAATTTTTCGACTCGGACGATGATCATTTTTCAAATACAGCCACGATAATGCAAGATTCGTCGAGCAGCGAGATCGCGACGAAAGCTCCGATTACGACAGCAGCGACAACGGCAACGGCAACGACGAGAACGACGACGAAATCATCGTCGAGGGACGATAGCGAGGACGATAGCATCGGCGAATACAAATGTCAGCATTGCGACAAAGTAATGGCAACGAAGAAGGGCCTTAGAAGGCACGTATCGATGCACAAGCCAAAAGCCGAGCCCGTAACATGCGAGATATGCAAAAAATTATGCGCGAGTCAGGCTCGTCTGGCCCTCCATCTAAAAACTCACAATAAACCGAAAGAAAAGGTGCCCCGCGAATATCTATGTCACATATGCAGCAAGGTATATCCGAGCAATTCGTCGTTGACTTATCACATGAGAACTCACACGGGCGTCAAGCCTCATGTTTGTAAAATTTGCAACAGCGGCTTCACGACAACGACGAGTCTCGCGAATCACATAAGAATACATACGGGCGACAAGCCGTTCGTTTGTCATGTCTGCAACGCCGCGTTCGCCGTTAGCTCGGCTTACAGGCGACACCTGACGAGGCACACCGGCGAGGCGAATTATTTGTGCAAAACATGCGGCAAGGCATTCAAAAGATTGAGCACCCTCAAGGAGCACACGTATACGCATTCGGGCGAAAAACCCTACGTTTGCAAAACATGCGGAGCCGCTTACAGTCATAGCGGCAGTCTTTTCGCTCATCAGAAACGCTGCAGAGCGCAGTACGGCGAGATGATCGAGGATCACAATGTTGCGCATCATATTCACGTTAATAATGTACAAACGGCAGTTCGATCGCTCGCTGTAATAGGTCAGATGTATTAG
- Protein Sequence
- MAMNTNYFGPPLNMDRICRICLLEGTNLTPIFCTEQEVDEFSGLSQKIQVCGSIDIHENDGFPSLICDVCIYKASIAHEFRQQCQQSDARLRLLYDKPAGANIADSCTQTEPQTRIILTSKIPSPRTTYYVKQELQPSNTQDYASAIEEYARNAPTGTVGRVSENPIDCQDEKIFLCDIGFVGAKEITDKEAETLAEAAANEATVVCPIPQTEITAGLLSVDENGRLETRRLIVKNDAEKCSSTEIADEYIKEQMMNETTMGESIAADEEDFEEQQQEELLRQQQQLQQQERNEARSLKRASLRKIKSASYSEDQIHDDDYFATVTVDQRSDQRPKYKCSVCLKRYMTQKGLRNHAQVHERNHKCAICHKTFFKLKNMEKHARIHDTRMHACKTCHASFAKISSLARHARIHVEAKFNDDDTAKLREINEATTTSTMIEIRKNDELSDLGSDEDDEIAVMPDPLTNEIDEYGNELYRCEICKQYCSSMKNLKRHSLVHGEKKYSCTVCKKCFFRPDTLKRHAEKHGHGLLDNIIDDDKFFDSDDDHFSNTATIMQDSSSSEIATKAPITTAATTATATTRTTTKSSSRDDSEDDSIGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICKKLCASQARLALHLKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCNAAFAVSSAYRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIEDHNVAHHIHVNNVQTAVRSLAVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -