Basic Information

Insect: Rhorus exstirpatorius
Gene Symbol: -
Assembly: GCA_963564615.1
Location: OY751315.1:30887616-30893717[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.05 4.9 8.2 0.0 1 23 366 388 366 388 0.95

2 12 0.27 26 5.9 2.0 1 19 389 407 389 410 0.93

3 12 6.4e-06 0.00064 20.4 1.2 3 23 458 478 457 478 0.97

4 12 0.00011 0.011 16.5 0.2 1 23 484 506 484 506 0.98

5 12 0.00045 0.044 14.6 2.4 1 23 512 534 512 534 0.98

6 12 7.8e-05 0.0077 17.0 0.8 1 23 540 562 540 562 0.98

7 12 0.00031 0.031 15.1 1.3 1 23 568 590 568 590 0.98

8 12 1.6e-07 1.6e-05 25.5 0.5 1 23 598 620 598 620 0.98

9 12 0.0053 0.52 11.3 0.2 1 23 626 648 626 648 0.94

10 12 1.9e-05 0.0019 18.9 1.4 1 23 654 676 654 676 0.98

11 12 2.3e-05 0.0023 18.7 0.6 1 23 682 704 682 704 0.98

12 12 0.0013 0.13 13.2 4.3 1 23 710 732 710 733 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.05	4.9	8.2	0.0	1	23	366	388	366	388	0.95
2	12	0.27	26	5.9	2.0	1	19	389	407	389	410	0.93
3	12	6.4e-06	0.00064	20.4	1.2	3	23	458	478	457	478	0.97
4	12	0.00011	0.011	16.5	0.2	1	23	484	506	484	506	0.98
5	12	0.00045	0.044	14.6	2.4	1	23	512	534	512	534	0.98
6	12	7.8e-05	0.0077	17.0	0.8	1	23	540	562	540	562	0.98
7	12	0.00031	0.031	15.1	1.3	1	23	568	590	568	590	0.98
8	12	1.6e-07	1.6e-05	25.5	0.5	1	23	598	620	598	620	0.98
9	12	0.0053	0.52	11.3	0.2	1	23	626	648	626	648	0.94
10	12	1.9e-05	0.0019	18.9	1.4	1	23	654	676	654	676	0.98
11	12	2.3e-05	0.0023	18.7	0.6	1	23	682	704	682	704	0.98
12	12	0.0013	0.13	13.2	4.3	1	23	710	732	710	733	0.95

Sequence Information

Coding Sequence: ATGGCCGTCGCAGTCGGTGAATTTGATTATTTGTGTCGTCTGTGCGCCGCCAAAACGGGAACTTTAATGGGTCTCCCGATCTTCGAAGCCGGCGAATGTTTGCGAAATATCGACAAAAAAATCGCCGTCTGTCTGCCAGTTCAGATATCGATGAGCGATCAGCTGCCAAAAGTCGTTTGCGCGGCGTGCGCATACAAGCTCGATCAGATGtttgattttcgtgaaaaatgttTGAGCACAGAGTGCATGTTTATGGAAATGCTCAAGGAAATAAAAGACGAGAATGGTCACATGGAGCGTACGCTCAGAGAGGTGAACGAAATTCCGGTTGCGCGTAACAGTATCAACAGGATTCATGGAAATATCGAGAGCGTACGAAGATGCGTAAACGATGATTGCGCATCGAGGGACGATCGAGACGACACGACGGTCGTTCACGATATGCAAGTTATGGACGAGATGGATCTGGCCGGCGGCGAGCAGGTCGTCGGCCAGGAGGAAATTGGAACTCAGGAGAATGACATAGAAGCGGCGGGCATGGATTGCCTCGACGGTGATACCGTTAGAATGGTCCACGAGCACATACGCGAAGTAACGAATCACGAGATCGCCATGCATCTGGAGGGTGACATAACTGTCGTGGGAGATCTCACCGTTGACGGTCATCTCGGTCAGCTCGGTATAAATTACGTGACAACCATAGCCACGGAGAATCCGAGTCAGGAACAAATAGTTCATTATTGCGATAATGTTAAATACGAGAACGTCGTTGTCAAGGAGGAATATCAGAGGCTAGAGGAGAGATTAACGGTCGATGTTTCAACGCATCCTATAGAAAATAATGTCATCGTGACCGATGATTTTTCGTCGTCGCATCGCGAAGCCAGTAGTAGCGAGCTCGAGAAAACGTTGATAAGCGACGAGGCCGCTGATGCCTCGAAATTGGAAGAGCTTCGCGACGACGTTGCACCGTCGACGAGTCACATTAGCGTGAAGGAGACGGAAATAATCGTCGAATATACGAAGCGAACGAAGGAAGCATTGTTGGAAAATGTGCTGAACAATCCGACGCTGGACGAGACGGGATCGAGCTGGTACGTTTGTCCATTTTGCAACGAGGCAGCGACCGAGCCGAATAGTCTCGCGGCGCATTTCGAGCAGCATTTTTGCTGCTGCAACTGCGGTCTTTACTTCACGAGCGTCGAATTACTGAATCTTCACGCGGAACAGTGCGATTTTTACAAGAAAGAAGAAGTAGACATAGAGGAAGAGgcagatgaagaagaagaagaagaagaagaagaagaagaagaagacgaagaagaagaagaaAGGCAGCCGAGCGTAAGGCAAAAATGGACGCCGAAGATTTGCGCCCAGTGCGGCAAGCAGTATCGGACGAATTACAAGCTTCAGGAGCACATGAGAAAGCACACAGGCGAGAAGCCATTTCAGTGTTTGCTATGCGAGAAAGCATTTCGCAGCAAGATCGGCCTTGCTCAGCACACCGCGACCCATACCGGTGAATTCGATTATAATTGCTCGACATGCGGCAAGGGCTTTCAATGCAAGAGCTATCTTATCGTTCATCAGCGCGTACACTCGGATCTAAAGCCATATCCGTGCGTTACATGCGGTCAAAAATTCAAGACGAAACAATCTCTGCTCGATCATGAGAATCGTCATATGGGCGTAAAGCCGTACATGTGCGAGATATGCGGACGGGGTTTCATCACGAAGGGCCTGTGCAAGAGTCATCAGAAGATACACTCGGGCAAGGACAATCGTCAGTATCCGTGCGAGGTTTGCAACAAAATGTTCGTTAGCAAGAGCTATCTGAATACGCATCTGCGTATTCATACCGGTGAAAAGCCATATCTGTGCGAGGTATGCGGCAAGGGTTTTCTGACGAGGGTAGATCTGAAGATTCATTCGACGATGCACACGGGCGAGAAGAGCTTCGAGTGCGAGATGTGCGGCAAGGTATTCGCCAGACGAGCCGCGCTGCGCTGTCATCGAAGATCCCATACGGGCGAACGTCCCTACAGATgcgacgtttgcggcaaaactTTTACCCAATTCAGTCCGATGGCGATACACAAGCGTCTTCATACGGGCGAACGCCCGTACGAGTGCGACGTATGCGGCAAAGCTTTCGTATCGAGATCGACGATGATGTGCCATCGCAAGAAGCATCATTTGCCACTGGTGGCGTCGAAGGATCCCCCCGTGACGAGCTGCGGCGACGGGACGAGCATCAAGGTAATCGATACGGGAGAAATTGGCCCCGGCGAGGCTCACGATCGAATGCAAATAACGCCGGATTGA
Protein Sequence: MAVAVGEFDYLCRLCAAKTGTLMGLPIFEAGECLRNIDKKIAVCLPVQISMSDQLPKVVCAACAYKLDQMFDFREKCLSTECMFMEMLKEIKDENGHMERTLREVNEIPVARNSINRIHGNIESVRRCVNDDCASRDDRDDTTVVHDMQVMDEMDLAGGEQVVGQEEIGTQENDIEAAGMDCLDGDTVRMVHEHIREVTNHEIAMHLEGDITVVGDLTVDGHLGQLGINYVTTIATENPSQEQIVHYCDNVKYENVVVKEEYQRLEERLTVDVSTHPIENNVIVTDDFSSSHREASSSELEKTLISDEAADASKLEELRDDVAPSTSHISVKETEIIVEYTKRTKEALLENVLNNPTLDETGSSWYVCPFCNEAATEPNSLAAHFEQHFCCCNCGLYFTSVELLNLHAEQCDFYKKEEVDIEEEADEEEEEEEEEEEEDEEEEERQPSVRQKWTPKICAQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGEFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCVTCGQKFKTKQSLLDHENRHMGVKPYMCEICGRGFITKGLCKSHQKIHSGKDNRQYPCEVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFECEMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCGKAFVSRSTMMCHRKKHHLPLVASKDPPVTSCGDGTSIKVIDTGEIGPGEAHDRMQITPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -