Rexs000341.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- -
- Assembly
- GCA_963564615.1
- Location
- OY751313.1:6174697-6177431[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.026 2.6 9.1 0.6 2 23 168 189 167 189 0.97 2 14 0.00029 0.029 15.2 4.0 2 23 201 222 201 222 0.98 3 14 0.0021 0.21 12.5 1.8 2 19 229 246 228 247 0.96 4 14 0.0042 0.42 11.6 0.6 2 23 325 346 324 346 0.95 5 14 5.2e-06 0.00052 20.7 0.3 1 23 382 404 382 404 0.97 6 14 6.5e-06 0.00064 20.4 1.1 1 23 410 432 410 432 0.95 7 14 3.8e-05 0.0038 18.0 0.6 1 23 438 460 438 460 0.98 8 14 3.9e-05 0.0039 18.0 5.3 1 23 466 488 466 488 0.97 9 14 2.5e-07 2.5e-05 24.9 0.9 1 23 493 515 493 515 0.97 10 14 0.00011 0.011 16.6 1.0 1 23 521 543 521 543 0.97 11 14 9.8e-08 9.8e-06 26.1 3.6 1 23 549 571 549 571 0.96 12 14 4e-06 0.00039 21.1 1.4 1 23 577 599 577 599 0.98 13 14 0.49 48 5.1 0.4 1 19 605 623 605 625 0.85 14 14 0.0018 0.18 12.7 1.2 1 23 631 654 631 654 0.94
Sequence Information
- Coding Sequence
- ATGGACGCTCGGTCTACCTGCAGTCAGGTTATGGATGAAAACATTGCGGGCGTCGCTCTTAAGGAAGAAACAGACGGGAGATTCGGCCAGTCGTACATCGAGGATATCTGCACCGGTACATTCGGCAAGGTTTTCCTACCAATCGACAGTCATGAAGCGGATTTCACGGATGAAATGGTCAAACTGGAGCTAGAGAGTCAATCGGGCGAGCATCATCATATCTGGGCAGCTCAATTAGCCACGACGACGCTGTGCGAGCAGGACGACTGCGGTATACACAGAAATCCACCTGCGGCCGTAGAAGCCGATAAATCGGGCCGAAAATCAGCGGAtcgagaagaggaagaagaggaagaagaggaggagAACAAAACGTCGGAGTCTTCGGAGGAACGAATCGAGGATAAGGACGAttgcgacgacgacgacgacgacgacgacgacgagaacgaCGAGAATGAGACGAGCAAGCCTAGCGGTAATTCAAAATTCTACAAGATCCAATGTACAATCTGTAAAAAGTGGTTTTTGAACAACGATTCGATGATAACGCATCTGAGAAGTCATTGCGGGATCGGCGGTAGCCTCACCGCCGGCGAGCAGTGCCAGGTATGCCAgcaattttttcatgataattcGAGTCTTCACGCACACATGCTGACGCACGTTGGCATGAATCCCATAGAGTGCAACGTATGCCAGAAGCGTTTTTCCTACAAATGGTGCCTGAGAAATCATTCGCCGACTCAAGTatccggaaaaaatttcgacgatTGCCCGACAACCGGAAGTAACGTCGTCATCGTCGCGAATGATCCCCGAAACGTTTCCATACCAATTGCCCCGATTCCTCCTTACGGTTTCAACgatactgcggatcatacgagAAAATTGTACGACGAGCATTGCCCGAGCAACGACGAGGAACCACGAAAGGATAGCAAGAACGATTGCGAGCCGAGGCTTGGCCTGCGATGCGATTTGTGCAAGATACGATTGAAAGATCGCGAAACCCTGAATCGGCATACTCTTGGACACATGAGCGATGGTTCCTACAGGTATGAACTATTTGCGGGAAATTATCCCGAAAAAACCAATGAAACCGTAAATTCGGATCCTAATCGGCAAACGGCAATGAAACAATTCGAATGTACGCTCTGCGATCGTTCTTTCGGCCAGAGAACGGCTCTTAACAATCATATGCTTGCTCACAGCGGCGAGAAGCCTCACGCTTGCGGTATTTGCGAAAAAACATACAAACGAAAATCCGAGCTCATAAGGCACAGCATGGTACACACGGGCGAGCGTCCCTACGAGTGCAAAGAGTGCCTCATGACTTTTCGCGAAAAGGCCAAATTGAATTCGCACATGCTCGTTCATACCGGCGAAAAGCCCCACGAGTGTTACATATGCCACAAAGCTTGCGCTCGCAAATCCGATCTCAACAGTCATATGCTTTCTCACACGGGCGGCCAGTACGATTGCAAAGTATGCGACAAAATTTTTACCCGTAAATCCGATCTTAGCAGGCACACGCTGATTCATACGGGCGAAAAGCCATTTGCCTGCGAACACTGCGACATGGCTTTTCGCGAGAGAACTCGCCTGAATTCGCACATGCTCGTACATACGGGCGACAAACGTCACGCTTGTCACATATGCGGCAAAAGTTTTCGCGAAAAATCATCGCTCAGAAAGCACATGCTCGTTCACACGGGTGATCGACCATACGAGTGCTACGTATGCAAAAAAAGCTTTACCCAAAAGACAACGCTCAACAGTCATGTGCTCGTGCACACCGGTGAACGATCATACGAGTGCGAAAAATGCCCGAAATCGCAGCGTGAAAGATCCGCGACGAGAAAACATTCGTCTTTTCGCGGCAATGCCCACGAGTGCAATGTTTGCTACGAAAAATTTAGCCACAAAGCTGCCCTCGACTCGCACACCGCCATCGATCATCCCTCATAG
- Protein Sequence
- MDARSTCSQVMDENIAGVALKEETDGRFGQSYIEDICTGTFGKVFLPIDSHEADFTDEMVKLELESQSGEHHHIWAAQLATTTLCEQDDCGIHRNPPAAVEADKSGRKSADREEEEEEEEEENKTSESSEERIEDKDDCDDDDDDDDDENDENETSKPSGNSKFYKIQCTICKKWFLNNDSMITHLRSHCGIGGSLTAGEQCQVCQQFFHDNSSLHAHMLTHVGMNPIECNVCQKRFSYKWCLRNHSPTQVSGKNFDDCPTTGSNVVIVANDPRNVSIPIAPIPPYGFNDTADHTRKLYDEHCPSNDEEPRKDSKNDCEPRLGLRCDLCKIRLKDRETLNRHTLGHMSDGSYRYELFAGNYPEKTNETVNSDPNRQTAMKQFECTLCDRSFGQRTALNNHMLAHSGEKPHACGICEKTYKRKSELIRHSMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECYICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLSRHTLIHTGEKPFACEHCDMAFRERTRLNSHMLVHTGDKRHACHICGKSFREKSSLRKHMLVHTGDRPYECYVCKKSFTQKTTLNSHVLVHTGERSYECEKCPKSQRERSATRKHSSFRGNAHECNVCYEKFSHKAALDSHTAIDHPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -