Rexs007416.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhorus exstirpatorius
Gene Symbol
-
Assembly
GCA_963564615.1
Location
OY751315.1:18534679-18541676[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.5 1.5e+02 3.5 0.0 3 19 252 268 251 271 0.84
2 15 0.0014 0.14 13.1 1.5 2 23 313 335 313 335 0.95
3 15 0.00019 0.018 15.8 0.1 1 23 341 363 341 363 0.97
4 15 4.4e-06 0.00044 20.9 2.6 1 23 369 391 369 391 0.96
5 15 4.1e-05 0.0041 17.9 4.0 1 23 400 422 400 422 0.97
6 15 2.3e-05 0.0023 18.7 2.3 1 23 428 450 428 450 0.97
7 15 2.5e-06 0.00025 21.7 0.3 1 23 455 477 455 477 0.98
8 15 0.00024 0.023 15.5 2.1 1 23 484 506 484 506 0.98
9 15 0.037 3.7 8.6 0.5 2 23 526 547 525 547 0.93
10 15 1.5e-05 0.0015 19.3 0.3 2 23 555 577 554 577 0.96
11 15 1.7e-06 0.00017 22.2 0.8 1 23 583 605 583 605 0.96
12 15 0.0017 0.17 12.8 2.4 1 23 611 633 611 633 0.98
13 15 2.3e-07 2.3e-05 25.0 0.6 1 23 639 661 639 661 0.97
14 15 1.3e-05 0.0013 19.5 0.4 1 23 667 689 667 689 0.98
15 15 0.00017 0.017 16.0 0.2 2 23 695 716 694 716 0.95

Sequence Information

Coding Sequence
ATGTGCGGTCAGCGAATCGTCGATGGTATCGATATTTTTGCGACGGGGGGATCGGAACTCGGGCTCAGAGAAAAAATTGGCTTACACACGCCTATATCGCTCGATTCGAGGGAAGCCATGCCGCAAAAAATATGCTACGAATGTTGCGACAAACTGGAAGCTACCCACTCTCTAGTCGTTACGTGTCTGCAGACCGATCTGAGATTGAGAAAATTTCTGAACATCGATGGCAGAcCCGGATATGATCCGAAATACGCGGATCTAcCCGGATATGATCCGAAATACGCGGATCTGGTAATTACTTGCACGATTGATCTGGATAATGAATTGAATGTCGGAAAAGTTGCGAAAAACGACGAGCCATCCGATATTCTCGTCGAGATTGATAAAATCCCTCGAGCCAATGAATTCAATGACAAATGGAGTGATAACGATCGACAATTTGAACAAACTGGCGTATGTCCGATGATTGAATCCAGGGACGATAGCGCGTCCAACGTGAAATACGCGATGCATGCGGAGTTTAACAATTTGCTTCAGAGCCTCGGTGTCGAGAGTCCAAGAAACGACGAGCCAACGGATAAATCGTCGATGCGAGAGCCGATGATCGCCCCGATTGAGGAAAATTCTCGATTAGCTCCTTTGAATTGCGTAAATTTGCTCGAAACACCGGAAATGCAACAAAGTCATGTCTGCGATCCCGAAAATTTGGCAATTTCAGGACAAAACGTTGAGCTCGAATTCAACGCGATTTGTCGAATTTGCGGGCTCGAGTTCGTCGATGCGAAGATTTACGAAAAACACGAAATTTCGTGCGACGTAAATTCATCGAAATCGAATAATCGAGAATCTCCGGGAATCGTAAATGGCAAACAAGATATTGATAGTCAGAAAATTTCGGGCAACGATGAATATCGATCTGCGACGACGAAACGACGCTGCGGCCATTGtccaaattttttcgctacccgcaaAGAATTGCAGAGTCATATTACCGTTTTTCACGCATCACAGCCGTTGTACATGTGCGGCATTTGCGAAAAAACTTATGAGAAATGGTCGAGTCTCGATGTTCACGAGGCTACGCATCGCATGGACAAGCCATATCTGTGCGATCTTTGCGGCAAAAGTTTCAAGCATTCCAACAATCTTCGCGGCCACAAGAGAATTCACATGGACGAATCGAAGAAGAAACGTCACCGCTGCGATATCTGCGGTAGCGCATTTAGATCGAGATTTCACCTTCGCGAGCACATGAATCAGCACAATGGTAATAAGCCATACGCATGCGAGAATTGCGGCAAAGCTTTCTGCAAGAGAATACAGTTGCGACAGCATCGCTTGTCTCATGGAACGAACAAATATGCGTGCCCAATTTGCGGCGTTACGTTCAATAGACGGGGCAACATGAGTACCCATCTCAAGAGACACGACAAGAACGAGAGAATGTACACTTGTAGCGTCTGCGGCTACGGATGCAAGTCGATGAGCGAATTGAAGCTGCATCGTAAGGAGCACACCAGTGACGAAATAACTAATAGCATAATAATGAAGAATGGGGATCGTAAAGCTTGGCGGTGCGatatatgcgaaaaatatttttcaaaacgcGCCATTTTACACGAACACGCGATGATCCATCGTGACGATCGTGCGAGAATCGAGTGCGACGAGTgcggaaaaaaattggcaaacaAGTCCTCGCTGAGATATCACGTGAGATCGTTGCACACGGGCATAAGGCCCCACGCTTGTAAATATTGCGGCGAATCTTTCGTCTCGAGGGACTCGCTCCGCATACACGAGAGAATACACACGGGCGAGCGTCCTTATGCGTGTGAAATTTGCAAAATGCAATACAGATGCTCGAGCAATTTGAGCCAGCATATGAAGATACATTCGTCATTGAGGCCCCACGTGTGCGAGTATTGCGGCAAAACGTTTATCCGCAAGGGTGCACTTCGTGTTCACGAGAGAATTCACACGGGTAACATGCCGTTCGTCTGTGAAACATGCGATCGTGGATTTGCCCAAAAGAATGACATGATCAAGCACGAGAGGACTCATCGCGATAAGCTCGTCAAGTGCGAGAAATGCGACGAGACTTTTGCGAGCAAGAGCGAAATTTTGAAGCATCTCGACGCTCACGAGACGAGTCCAATCGAGGATTCGATCGTTACGGGATATCCCGATTGTATCGAGAACATCGGAAATTTACGATATTGA
Protein Sequence
MCGQRIVDGIDIFATGGSELGLREKIGLHTPISLDSREAMPQKICYECCDKLEATHSLVVTCLQTDLRLRKFLNIDGRPGYDPKYADLPGYDPKYADLVITCTIDLDNELNVGKVAKNDEPSDILVEIDKIPRANEFNDKWSDNDRQFEQTGVCPMIESRDDSASNVKYAMHAEFNNLLQSLGVESPRNDEPTDKSSMREPMIAPIEENSRLAPLNCVNLLETPEMQQSHVCDPENLAISGQNVELEFNAICRICGLEFVDAKIYEKHEISCDVNSSKSNNRESPGIVNGKQDIDSQKISGNDEYRSATTKRRCGHCPNFFATRKELQSHITVFHASQPLYMCGICEKTYEKWSSLDVHEATHRMDKPYLCDLCGKSFKHSNNLRGHKRIHMDESKKKRHRCDICGSAFRSRFHLREHMNQHNGNKPYACENCGKAFCKRIQLRQHRLSHGTNKYACPICGVTFNRRGNMSTHLKRHDKNERMYTCSVCGYGCKSMSELKLHRKEHTSDEITNSIIMKNGDRKAWRCDICEKYFSKRAILHEHAMIHRDDRARIECDECGKKLANKSSLRYHVRSLHTGIRPHACKYCGESFVSRDSLRIHERIHTGERPYACEICKMQYRCSSNLSQHMKIHSSLRPHVCEYCGKTFIRKGALRVHERIHTGNMPFVCETCDRGFAQKNDMIKHERTHRDKLVKCEKCDETFASKSEILKHLDAHETSPIEDSIVTGYPDCIENIGNLRY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-