Basic Information

Insect: Rhorus exstirpatorius
Gene Symbol: -
Assembly: GCA_963564615.1
Location: OY751313.1:20980296-20982827[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00045 0.045 14.6 2.8 1 23 323 345 323 345 0.97

2 15 0.025 2.4 9.2 0.9 1 23 351 374 351 374 0.95

3 15 2.3e-05 0.0023 18.7 0.5 2 23 468 489 467 489 0.97

4 15 4.7e-05 0.0046 17.7 3.1 1 23 495 517 495 517 0.98

5 15 0.00068 0.067 14.1 1.7 1 23 523 545 523 545 0.96

6 15 1.4e-06 0.00014 22.5 0.9 1 23 562 584 562 584 0.98

7 15 7.5e-07 7.4e-05 23.4 1.1 1 23 590 612 590 612 0.97

8 15 3.2e-05 0.0032 18.2 1.6 1 23 618 640 618 640 0.97

9 15 0.0024 0.24 12.3 0.4 1 23 646 668 646 668 0.99

10 15 6.3e-06 0.00063 20.4 0.3 1 23 674 697 674 697 0.94

11 15 1.9e-05 0.0019 19.0 1.3 1 23 703 725 703 725 0.98

12 15 0.00041 0.041 14.7 4.7 1 23 731 753 731 753 0.98

13 15 7.2e-05 0.0071 17.1 0.2 1 23 759 782 759 782 0.96

14 15 5.1e-06 0.00051 20.7 1.5 1 23 788 810 788 810 0.97

15 15 3.6e-06 0.00036 21.2 4.5 1 23 816 838 816 838 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00045	0.045	14.6	2.8	1	23	323	345	323	345	0.97
2	15	0.025	2.4	9.2	0.9	1	23	351	374	351	374	0.95
3	15	2.3e-05	0.0023	18.7	0.5	2	23	468	489	467	489	0.97
4	15	4.7e-05	0.0046	17.7	3.1	1	23	495	517	495	517	0.98
5	15	0.00068	0.067	14.1	1.7	1	23	523	545	523	545	0.96
6	15	1.4e-06	0.00014	22.5	0.9	1	23	562	584	562	584	0.98
7	15	7.5e-07	7.4e-05	23.4	1.1	1	23	590	612	590	612	0.97
8	15	3.2e-05	0.0032	18.2	1.6	1	23	618	640	618	640	0.97
9	15	0.0024	0.24	12.3	0.4	1	23	646	668	646	668	0.99
10	15	6.3e-06	0.00063	20.4	0.3	1	23	674	697	674	697	0.94
11	15	1.9e-05	0.0019	19.0	1.3	1	23	703	725	703	725	0.98
12	15	0.00041	0.041	14.7	4.7	1	23	731	753	731	753	0.98
13	15	7.2e-05	0.0071	17.1	0.2	1	23	759	782	759	782	0.96
14	15	5.1e-06	0.00051	20.7	1.5	1	23	788	810	788	810	0.97
15	15	3.6e-06	0.00036	21.2	4.5	1	23	816	838	816	838	0.99

Sequence Information

Coding Sequence: ATGGATAAAGCGGCTAATCGATGGATTCCCGCAAAGGTTTCTCCCGACGAAAAGTTACCCGTTGCTCTCGATTCTTCCTTCGTTGCcgtgaagcaaaaaaattattacatcgAAGATACCAACGAAGGGCTCACGAGCGTGGATGAAGAGAACAAGTCGGCGAATCTCGATACGATAAATTTTACTCATAATAACGGAGCTAGAATATTCAGCGACGAGACGACTTCTCTTCCCTCGTCGGTGAGAATAAATCACAGAGCTCAGATAGACGTGATAGACATGCGAGAGGAAATAACCGACGCTCGAAAGCACATCCTGATTTATGAGGAGCAATATACGAAATTGATTATTCTCAGAGCGCTGAGGAGCGTCGAGCCCGTCGAGGTAGCGAGCCAGCTCGTCGATATAGTAACGACGATCGGTGCACCGCGAATAATTCAGAGCGGAAATGGTCGTGATTACGCGGAGCAAGTCGTGCGCGAGTTGCGCCTTTTGCTTCGTGATTTTTGCGTCGTTCACGGCGACGCGACGAGCAGCAGCGACGAGGACAGACGCGATTTCACCGCAATAATAAAATCATGGATGAAAAATAATCCGGGAAGAGCGTTTAACGAGGCGCTGAGATACGTTCAGGTAGCCGAGAATACAACGGTGAATTCGCGCAATGGAAAAATTCCCAGCCAACTGTTCTTCGGTAGAAATATCTGCGAGGATCTTCGCAGAACGATCGGCGCCAAAGCAGCAACGAGAAGAAATGTTTTTCCCCCGGAAGACACGAATACGGTGAGAAATGATTTATTGGAAAATTCATTGATTTCCCAAATGTTAATCAAGGATGATTCAGCGATAACGAGCTCGCATAACTGCAATCCCTCGGATCGTACGAACGAATCGTCAATTATTCGCGAAACCATCGACAAACTCGAGTCCGACGAGGAACGAATTTCCGTAAACGGGGAAAAGTACTTTGACTGTAAAACATGCCCGAAACGTTGCACGAAGCTCGGATCTCTGAGAAATCACGTGAAAATACACGAGAGAATCGGTAATTTCGCGTGTGCGTTATGCCACGAGTCGTTTGGCTCGTCGAGCCTACGCGACAAGCACGCACGAAGCTCGCACGAGAAGAAGATATTTGAGAATGACGCGAAGCCGAATGACGATTATTCCGTACGATTGGAGAGGAAAAAAGACGATATGGAATCGGACGATAGGACGAAGAACGGCAGAGCTCGTGAAACGGACGAGTTATCCGTGGATATTCATTCTTCGATGAGGAAtatggaggagaaaaaaatttctcccaaGCGCGAGCGAAGAAGATCTTTGAGAAATTTTAATAGCAGAGAAAAACGCGACGGTGTCACGAGAATAACGAAAACGAGGAGCAATCCTAATCTCGTATGCGCATACTGCgagcaaaaattcaattttccaagTGTCCTGAAGAGGCACATGCGTTCGCACACGAACGAGAGACCGTACGTTTGTCAATTGTGCAAAAAGAGCTTCAAACAATTGGGCCATCTGAGCCAGCATTCTCTCACTCATACGGACTATCGGTCATTTCAATGCACGATATGCACGATAAAATTCGATTCTCCGGAATCGCTCAAGCTACATTCGCATTCGCACAAAGACACGGACTTGCCTCGTCGTTCCAATAACGAGACACGTCGCTGTTACGTTTGtgatatttgcaaaaaaatcttCACGACCAAGAGCGTACTAGAGCGTCATTTGTTCACTCACACGCACGAGAGAAAATTTGCCTGTAAAATATGCGGCAAAAGATTCAAGCAAGCCGGTCATGTAAAATCGCACATGCTCGTTCATACGGgcgaacgaaaattttcatgcacAATCTGCGCCAAACGTTTCAGTCTCTCGAATTCATTGAAGAAGCACATGTACGTTCACAACGGTGAGAAGCCTTATCAGTGCGACGTTTGCGGCTCGAGATTTCTCGAAAAACGTAATCTCAATGGTCATCTGATGACccacacgaacgaacgaccgtTTTCCTGTAAAATTTGCGGTAAACGTTATACCCTCGCTGACACCCTCAGGCGTCACATTAGCGCTGCGCACGAGGACGGTCGCACGTATCAGTGTGAAATTTGCGCTAAAATGTTCAAGCAGCTTGCACACTTGTCGGTTCATAAAAAAGTTCACAACGACGAGAGGCCCTTTCAGTGTCATCTTTGCGAGAAAAATTTTAAGCACAAAAACGTACTGAAGTCACATCTGGCGATACACGCCAATTTACGGCCCTTCGAATGCGACGCTTGCAAAGCAACGTTCGTTAGAAAAACGAATTTACAGACTCACATAGCTTCGGCTCACATGAACGAGCGCCCTTATACTTGCACGATATGCAACAAACGATTCAAGCAGATAAGTCATCTCAACGGTCATATCGTCGTGCACAGTAATTCCATGCCCTATCAGTGTGATTTTTGCGATCGTCGCTGCAACAGACTCGATAATCTGAAAAAACACATGAGACTGCACACGAAGAGTcgggaatga
Protein Sequence: MDKAANRWIPAKVSPDEKLPVALDSSFVAVKQKNYYIEDTNEGLTSVDEENKSANLDTINFTHNNGARIFSDETTSLPSSVRINHRAQIDVIDMREEITDARKHILIYEEQYTKLIILRALRSVEPVEVASQLVDIVTTIGAPRIIQSGNGRDYAEQVVRELRLLLRDFCVVHGDATSSSDEDRRDFTAIIKSWMKNNPGRAFNEALRYVQVAENTTVNSRNGKIPSQLFFGRNICEDLRRTIGAKAATRRNVFPPEDTNTVRNDLLENSLISQMLIKDDSAITSSHNCNPSDRTNESSIIRETIDKLESDEERISVNGEKYFDCKTCPKRCTKLGSLRNHVKIHERIGNFACALCHESFGSSSLRDKHARSSHEKKIFENDAKPNDDYSVRLERKKDDMESDDRTKNGRARETDELSVDIHSSMRNMEEKKISPKRERRRSLRNFNSREKRDGVTRITKTRSNPNLVCAYCEQKFNFPSVLKRHMRSHTNERPYVCQLCKKSFKQLGHLSQHSLTHTDYRSFQCTICTIKFDSPESLKLHSHSHKDTDLPRRSNNETRRCYVCDICKKIFTTKSVLERHLFTHTHERKFACKICGKRFKQAGHVKSHMLVHTGERKFSCTICAKRFSLSNSLKKHMYVHNGEKPYQCDVCGSRFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANLRPFECDACKATFVRKTNLQTHIASAHMNERPYTCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKSRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -