Rexs007565.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- -
- Assembly
- GCA_963564615.1
- Location
- OY751315.1:22954998-22960681[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.16 16 6.6 1.5 1 23 43 66 43 66 0.95 2 31 0.00069 0.068 14.0 0.4 1 20 79 98 79 100 0.92 3 31 1.7e-05 0.0017 19.1 0.8 2 23 133 154 132 154 0.96 4 31 0.04 3.9 8.5 0.1 3 23 160 180 159 180 0.97 5 31 0.00084 0.083 13.8 0.1 3 23 188 208 186 208 0.96 6 31 2.8e-06 0.00028 21.6 0.3 3 23 216 236 214 236 0.97 7 31 4.7 4.7e+02 2.0 2.8 3 23 275 294 275 294 0.83 8 31 1.1e-06 0.00011 22.8 1.2 3 23 302 322 301 322 0.98 9 31 8.3e-06 0.00082 20.1 1.6 1 23 328 350 328 350 0.98 10 31 0.88 87 4.3 0.1 1 23 427 449 427 449 0.92 11 31 0.011 1.1 10.2 0.3 2 23 457 478 456 478 0.96 12 31 6e-05 0.006 17.4 0.7 1 20 487 506 487 508 0.95 13 31 0.00026 0.026 15.4 0.1 2 23 516 538 515 538 0.92 14 31 4.8e-06 0.00047 20.8 0.9 2 23 544 565 543 565 0.96 15 31 2.2 2.2e+02 3.0 1.7 1 23 569 591 569 591 0.89 16 31 0.016 1.6 9.8 1.7 2 21 598 617 597 619 0.92 17 31 4.3e-05 0.0043 17.8 0.2 1 23 625 647 625 647 0.99 18 31 4.9 4.8e+02 1.9 5.4 1 23 656 678 656 678 0.98 19 31 0.76 75 4.5 0.2 3 23 686 705 684 705 0.93 20 31 6.2e-06 0.00061 20.5 1.2 1 23 711 733 711 733 0.97 21 31 4.2e-06 0.00041 21.0 2.3 1 23 739 761 739 761 0.99 22 31 0.005 0.5 11.3 2.0 1 23 857 879 857 879 0.98 23 31 0.0003 0.029 15.2 2.4 2 23 886 908 885 908 0.94 24 31 4.8e-05 0.0047 17.7 3.6 2 23 915 936 914 936 0.95 25 31 0.36 36 5.5 0.5 1 23 940 962 940 962 0.95 26 31 0.00013 0.012 16.4 1.0 3 23 970 990 968 990 0.96 27 31 3.2e-05 0.0032 18.2 0.1 1 23 996 1018 996 1018 0.98 28 31 0.82 81 4.4 1.4 1 23 1024 1046 1024 1046 0.96 29 31 9e-06 0.00089 20.0 0.3 3 23 1054 1074 1052 1074 0.96 30 31 5.3e-06 0.00052 20.7 0.4 1 23 1080 1102 1080 1102 0.98 31 31 9.7e-05 0.0096 16.7 3.7 1 21 1108 1128 1108 1130 0.94
Sequence Information
- Coding Sequence
- ATGATCACCGGTCAGCTGAGAAGAGCAAGGAAATTGAagcgaaaaatttcgatgataaGACACGAAAAAATTGTCACTAAACGTGAAAGAATAGGCTCGTCGTCGTCGAGGCTCAGCGATGAAAAATATCGTTGCGAATATTGCAACGTTAATTGCGAATCCGATGAATCATTGCACCTTCACGTGTCCATCGTgcacaaacgaaaaaatatttcagcaaaaaaatcatcgattcacGCGTGTCGTTTATGCGACGAGAAATTTACGAGAAAAGCGTCGCTCGTCAGGCACGAGAAGGGACGTTGCGTGAGAATAAAAAAGCCGAGTTCAACGGGTTTTGTTATCGAACAAAGGAAtccgtcgaattttcgaaaagacAGATCCTCAGGACCCATCGAGTGCGACGTATGcaagaaaatattcaagaaaaagCGTTATTTACGGGTTCACATGAGCATCCACGGTTCACCGAGGATATGCGAGATTTGCGGTGCAACTTTAGCCTCCGATCTGAGTCTCGAGCAGCACACGAGGCGTCACAATTACGATTACGCATTGTTCTGTGAAATATGCGAGAAGGGCTTTTACGACGATGCAACGCTGAGATTACACATGAGCGTGCACACGAATGAGATGAGCATAGCCTGCGATATCTGTAAACGTCCGTTTGCCAATCGTGTTTATCTGCGAAGTCACATGAGAACTCATCTTGATCCGAGCTtgcgaaaaaaatacaaatgcgaaatttgtaatttcgaaacattttggAGCTACTGCCACAAGGAGCATCGTACGACGCATACGGGCGATGGTAGAATCGGCTGCTCGATTTGCGGCAAATTCATACGTCGACCGTACATGAAGTGTCACATGAGAATGCACAACGATGAGAAAAATGAGATCTGCGAATATTGCGGAAAGGGTTTCATATCGAGGAAATATTTGACGAAGCATCGACGTACCCACACGGGCGAGAGACCCTACACATGCTTCGTTTGCGATGCCAATTTTACCCAACGCTCCAGTCTAACGAAACATCTCAAGCTTCATGACACAAATGAGATCGTAGAATTTACCAAATTTTCGCTACGAGCCATCAGGCGTACCCGTGTTTCGCGAAATTCGACAGTGTCATcgttgaaaattacgaaaaaaattgccgTAGCCACGAGATGCGATGTATCTTTGGACAAAGTATCATCGTcattttcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgaagAAAACGAGACGCTcgatgaaaaattcacgaatataCAAGTGTCGCGAGTGCGATTACGAGATACCGGGTATAATTAATATCAAGCGTCATTTGGAGCAGCACGGTATGATCGCTAATATGATAAGTTGCGATCTTTGCGACGAAAGATTTCCAACTAATCGCGAGCGTCTCGATCATCGTCGCGAGCACAAAAAATCATCCGTCTCGTTGCTATACGAGTGCGATCATTGCGATGAGAAATTTTCGCGCAAGCTCGATCTTTCGAGGCATCGAGCGTTGCTTCGAGGCCTCAAATGGATACCATGCGACGATTGCAGACGCTCATTCGCCACGTACGCGGCACTCGAGACGCACATGATATTCAAGCATCCGATTGGCGCTATAACTTGTGATATTTGtgagaaaaaattcaagaaaaaatcatatttaacgTCGCACATGGTGATACACGAGAGACCGTACGTTTGTCATTtgtgcggagcgaaaaaatccTCCGATGCTATACTGCGGGCGCATCTCAGGCGTCACAACAATGAATTTCGTTTATCTTGTGATATATGCGAGAAGGGCTTTCACACGAGGGCATCCCTTGAGATTCATGCAAAGTGTCATGTCGAGGATAAACCGTACAAATGCACGATCTGCGATTCGGCATATCGTTCGCCGGCTTATCTGAGGATACACGCGAAGACACATGGAAATCCGGAATCGCGCAGGCTTTATAGCTGTGATACGTGTGATTTCGTGACTTATCACGCGAGAAGCCACAAGTATCATGTTCGTACGCACACGGGTGAAAATCAAATTGCTTGTGATATTTGCAAAAAGCTCGTTTCGCGCGAATACATGAAGATACACACGAGGATACATACGGGTGAGAAGCCTCATGTATGCGCGACATGCGGCAAGGCTTTTACGTCGAAGAAAAATCTCGTTGTACATTCGCGAAGTCATACCGGCGAACGTCCCTACAAGTGCGAATACTGCGAAAAATCGTTCGCTCATAATGCCACACTGAAAATTCACGCGAAGAGGCACATGTGCTTAGCGGAGATTCGCATATCGGAAAAAAAGGATCCGATAGATCTGGCGGAGGAGTACGCGAGGAGGCGCGTCGTCGATGATGCTTCGTTGATCGAAGAATTTCAGACTTTCGACGTGCGCGAGATTATCACGGAGAATCTCGAATGCGCGTCgatcaacgaaaaaaacaacgacgacgacgacgacgacgttgaaaaaaaacgaaactcgatgaaaatcgaaaaatttgactTACCGAATTATGACGATGAcgtaacgacgaaaaaaacTCGTAAAACATACATCTGTGATATTTGCaacaaaaaaatgagaaacaagCTGCAGTACGTTCGGCATCGTCGtaatcatgagaaaaaaaaaatttgccactGCAACGATTGCAATCGTATTTTCAACGACGAGGACAAGCTCGCCAAGCACATTATCAAGATTCATCAGTTGGATAAACCATGCCCCTGCAAGCTCTGCGGCAAGAGCTTCAAGACCGAAGAATTCCTGAAGACTCATCTCAAGCAGCACAACAAGCGTTTCACCTGCGACATATGCGGCGTTAACAAGGTATCCGGTTACGATCTGCGCTTGCACAAGAAAAAACACAATCGCGATTATGTCGTTCATTGCGGCATATGCAACAAGGGCTTTTACACAAATCAGACCCTCGAGCGTCATGCTCTCACGCACACGGGCGAAAAGCCATTTGTCTGCGAGATATGCAATATTTCATACGCCAGCTCCGCTTATCTCGTCATGCACATGAAGTCTCATGGTCAGCGTCAAAAGCACAAGTGCGCTATCTGTAATTTCGAGAGTCACTGGAAGGCCGCCCTTAAGGTACATCTCAGGATACACAGCGGTGAGAATCAGATAAATTGCGAGATATGCGGTAAATCGGTATCGAGCAAAACTTATATGCGCATACACATGAGAATACACACCGGCGAGAAGCCACATGTTTGTGAGATTTGCGGCAAGGCATTCGGCGTCAAGAAATATCTCGTCGTACATCTGCGAACTCACACGGGCGAGAGGCCCTACGAGTGCAAGATATGCAAGAAGAGATTCACGCAGCAGGGATCGCTGAATTCGCATGCCAAGTGTCACAATTCCGTCAATTGA
- Protein Sequence
- MITGQLRRARKLKRKISMIRHEKIVTKRERIGSSSSRLSDEKYRCEYCNVNCESDESLHLHVSIVHKRKNISAKKSSIHACRLCDEKFTRKASLVRHEKGRCVRIKKPSSTGFVIEQRNPSNFRKDRSSGPIECDVCKKIFKKKRYLRVHMSIHGSPRICEICGATLASDLSLEQHTRRHNYDYALFCEICEKGFYDDATLRLHMSVHTNEMSIACDICKRPFANRVYLRSHMRTHLDPSLRKKYKCEICNFETFWSYCHKEHRTTHTGDGRIGCSICGKFIRRPYMKCHMRMHNDEKNEICEYCGKGFISRKYLTKHRRTHTGERPYTCFVCDANFTQRSSLTKHLKLHDTNEIVEFTKFSLRAIRRTRVSRNSTVSSLKITKKIAVATRCDVSLDKVSSSFSSSSSSSSSSSKKTRRSMKNSRIYKCRECDYEIPGIINIKRHLEQHGMIANMISCDLCDERFPTNRERLDHRREHKKSSVSLLYECDHCDEKFSRKLDLSRHRALLRGLKWIPCDDCRRSFATYAALETHMIFKHPIGAITCDICEKKFKKKSYLTSHMVIHERPYVCHLCGAKKSSDAILRAHLRRHNNEFRLSCDICEKGFHTRASLEIHAKCHVEDKPYKCTICDSAYRSPAYLRIHAKTHGNPESRRLYSCDTCDFVTYHARSHKYHVRTHTGENQIACDICKKLVSREYMKIHTRIHTGEKPHVCATCGKAFTSKKNLVVHSRSHTGERPYKCEYCEKSFAHNATLKIHAKRHMCLAEIRISEKKDPIDLAEEYARRRVVDDASLIEEFQTFDVREIITENLECASINEKNNDDDDDDVEKKRNSMKIEKFDLPNYDDDVTTKKTRKTYICDICNKKMRNKLQYVRHRRNHEKKKICHCNDCNRIFNDEDKLAKHIIKIHQLDKPCPCKLCGKSFKTEEFLKTHLKQHNKRFTCDICGVNKVSGYDLRLHKKKHNRDYVVHCGICNKGFYTNQTLERHALTHTGEKPFVCEICNISYASSAYLVMHMKSHGQRQKHKCAICNFESHWKAALKVHLRIHSGENQINCEICGKSVSSKTYMRIHMRIHTGEKPHVCEICGKAFGVKKYLVVHLRTHTGERPYECKICKKRFTQQGSLNSHAKCHNSVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -