Basic Information

Gene Symbol
basR
Assembly
GCA_963564615.1
Location
OY751319.1:14983486-14986221[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 1.4 1.9e+03 -0.5 0.0 3 18 166 181 164 182 0.89
2 6 9.5 1.3e+04 -3.2 0.0 22 43 252 275 247 277 0.74
3 6 1.6e-08 2.1e-05 24.9 0.1 3 44 286 329 284 330 0.95
4 6 2e-08 2.7e-05 24.6 0.1 3 43 340 384 338 386 0.95
5 6 3.2e-11 4.2e-08 33.6 0.0 1 45 393 438 393 439 0.95
6 6 1e-09 1.4e-06 28.7 0.2 3 41 448 486 446 488 0.96

Sequence Information

Coding Sequence
ATGAGCGATCCGGAGGACGATCGTGAATTTCTCGACGAGATAAAAGCCCTCGAGGATGTGCTCGCCCAGGAGGAATCATCGACCTCGCGAATCGTCGATAATGACGTTTCGACGCGCAACGTCCACGCTGGCCGCCGAGGTAACATTCCCTCCCGAGGATTCGGCCAAGTTGAGCAGCAGCCCGAGCGCATCGGTACGTACGACAATGATAATCTTTATTCGGCATACGAGACTAACAGGAAGCTCATAGATCTACTGAGGGAGACTAAACGCGAGCTATTGACGATACTCGAGAGATGCGTCGAGAACAAGACgattataaacgaaaaaattcgtatcaGAGCCAAGAGCGCCAAGAGCACCAAGCTGCTCGTGTGCACCGCGGGAATGCCATATTTCAAAGACGCCAAACATTATCCGGCGCCGTTGAACGACGACGCGAGAACAAAGAAGAGAAAAGGCGAGCTACAGGTGATGCAGCTACGTTACACATGTCCGTGGACCGCAAAGGACAGAAATATTCTTTGGCGAGCGATACGCCAGCAAGCCGCCGCCGTTGTTCTCGAGTCGGCAAATCTCGACGCGACGGATCCTGCGCTCGTGAATTTCGGGAACGACGTCGGCGGcgaggaagaagaggaagagagcGGCGAAGTCGCTCGCGCCGGAACATCGAGCGGCGGAATCGCGGCTAGGCTGAATCTACCGAAAAACTTCAGGAGCATGATTGGTCCGCTGGGAGCGAGGGAATTCGATTGGCTGAGGATAGCCGCGAGCGATTTCGACGATAGGCATACGGCCGACGAGTGCAGAGTAATGTGGCGCGTATTTCTTCATCCCGACGTCAACAGATACAAATGGAGCAGGGAGGAGGACGCGGGAATCGATAGACTGAGCGAAAAGTACGAGATGCAAGATTGGGACGAAGTCGCGAGGGAATTGAACAGCGGAAGAAGCGGCTATCAGTGCTTCATAAGATACAACAGTATAAATCGTGCGAGCCGCAGCGACGAGAGCGCCTGGAGCTCAAAGGAGGACGCGAGACTGCGAAGATGCGTGGAGAAATTTCGTATCGGTCATTACGTACCGTGGGGCACGGTGGCGAGATACATGGGCTTCAGGAGCAAGGGACAGGTTTATTATCGCTGGATGTACAATGCCTCGCCGCATCTGAAGAAAGGCCGTTTCACGGAAGACGAGGATGAGCTATTGACGAGAGCGGTAcggatgtatggaaaaaatttctgtaaaatATCAACGTCCGTTATTACGAACAGATCGAGCGTACAGCTAAGCGATCATTATCACACGCTGGCGATGAGAAAACGCGGTATGCAAAATTACTGGAGCATCAACGAGGACGCGCGTTTGCTGATTCTTTACAACAAGCACGGCGCCGATTGGTCGCGCATAGCCCGCAGCATTATCGGCAAAACGAGAACGCAGCTGCGACATCGTCACAAAGCGATCGTACGTTATTGGGACAGGGGAATATCGCTGTACGAAATTCCACGTGATTTAAAGAGAAATTTTTCTGATCACGCGAACGACGACGAAGCCGTGACCGAGGCCTGCGATAACGAGCTGATAGATCGCTTGGAGCGtgaaagaagtgaaaaaaatcgtagcaaacGTACGAGCGATATCGAGCCAATCGATCGGGAGCTGATAAAGTATTTTCAGCTTGTACCGGGAACATCGAAACCCGgaagaaaacgaaaatattACGAGAACGATGAGCTTGAGGATATGACGAGAAAATTGTGTATTATTCTCAAGGCACTTGGCGCGAATCTTGAAATACCGACGGAACTCGAGGAAATGGCCGTTACCGAGAAGGACAAACAATTGGCAAAATCCTTGAACGATTATCAGAATTTGCAGTCCGAGTATGCGAAATTTCCGACGAGAGACGTGCGATACGGCGCTGTCGTTTGTAACGATGACGAAGCTGATGAAAATGAGGAAAAACATTTTGCGCCATTGTGCCGAGGTGATTGCAATCGAATGGAAAAATTGCGATGGCACGAAAAGATCGATTACGAACCACCGGCAACGTTACAGCACTGCCAGTTGGCGTTGAATATGAAATTGAATACCCCCGAGACGATCGTCGAACTGGTCGGCGAAGATGGAAACATGGAATTTGAGAGACTCGGGAAAATCTTGATTTCGGGAAAAATCGAATCGCGCCAATTTAATATTACCGAACGAATATACGCATCGGAAGTGCCGTTATGCGCGAAAATATTGCCGAGCATTGAGACCGAGGCTTCGTCACGTGACTCGGGAAGCTTCGAGATTCAGGAAAGGAATAGCGCGAgctgtagtaaaaaaaaacgcggcaCGAAAAGAGAGAAGTCATGGAGTTCTAGTACCAGCGAAGGGATAATTCAGTGCTTGGATCAGCCGTTTAGCTGCATCGAGCCGAATTATTATACGCTTCTGGGCCTCCAGCACATTGTTTCAAAAGCCAAAATTAGCTTCGAACCGGATCGCAAGGAAGAAGTATATTCGAGCGAGGGCAAAAAATCGATGGCAATATTGAAGAAACGACTGATACAGCTATTCAAATATCCGATCGGCTTGTCGCATATTCTTCGACCGGAAGTATACGTTGGAAGAAATGTACAGAGCATGGAGATCAAGAACGACGACGCGAGTAACGATGAGGATATCGCCGATGGGTGCTCCAAAAAAATCGTTGcctccgatttaaaaaaaacgcgactTTAA
Protein Sequence
MSDPEDDREFLDEIKALEDVLAQEESSTSRIVDNDVSTRNVHAGRRGNIPSRGFGQVEQQPERIGTYDNDNLYSAYETNRKLIDLLRETKRELLTILERCVENKTIINEKIRIRAKSAKSTKLLVCTAGMPYFKDAKHYPAPLNDDARTKKRKGELQVMQLRYTCPWTAKDRNILWRAIRQQAAAVVLESANLDATDPALVNFGNDVGGEEEEEESGEVARAGTSSGGIAARLNLPKNFRSMIGPLGAREFDWLRIAASDFDDRHTADECRVMWRVFLHPDVNRYKWSREEDAGIDRLSEKYEMQDWDEVARELNSGRSGYQCFIRYNSINRASRSDESAWSSKEDARLRRCVEKFRIGHYVPWGTVARYMGFRSKGQVYYRWMYNASPHLKKGRFTEDEDELLTRAVRMYGKNFCKISTSVITNRSSVQLSDHYHTLAMRKRGMQNYWSINEDARLLILYNKHGADWSRIARSIIGKTRTQLRHRHKAIVRYWDRGISLYEIPRDLKRNFSDHANDDEAVTEACDNELIDRLERERSEKNRSKRTSDIEPIDRELIKYFQLVPGTSKPGRKRKYYENDELEDMTRKLCIILKALGANLEIPTELEEMAVTEKDKQLAKSLNDYQNLQSEYAKFPTRDVRYGAVVCNDDEADENEEKHFAPLCRGDCNRMEKLRWHEKIDYEPPATLQHCQLALNMKLNTPETIVELVGEDGNMEFERLGKILISGKIESRQFNITERIYASEVPLCAKILPSIETEASSRDSGSFEIQERNSASCSKKKRGTKREKSWSSSTSEGIIQCLDQPFSCIEPNYYTLLGLQHIVSKAKISFEPDRKEEVYSSEGKKSMAILKKRLIQLFKYPIGLSHILRPEVYVGRNVQSMEIKNDDASNDEDIADGCSKKIVASDLKKTRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-