Rexs002212.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- ttk
- Assembly
- GCA_963564615.1
- Location
- OY751313.1:39069957-39072124[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1 6.4e+03 -2.6 0.0 12 26 343 356 341 356 0.80 2 2 4.3e-08 3.4e-05 23.9 0.0 6 39 365 398 360 401 0.87
Sequence Information
- Coding Sequence
- atGGGAGCCTCGGATCGTTACTGCCTTCGATGGAACAATCATCagacaaattttatttccgtAATGGACGATCTTTTGAAAAATCAGACACTGACGGACGTGACGCTTGGCGTTGAGGACGGTCGTTTTCTCAAATGTCACAAAATCATATTGGCCATTTGCTCGCCATACTTTCATTCGTTGTTTATCGAGGTACCGTCGAAAAATCCGATAATACTACTCAAGGACGTGAAATATACGGAGATAAAGGCGATATTGGAGTTCATGTACAAGGGAGAGGTGAGCGTGGCGTACGATGAAATGGCGGCTTTGTTACAAGTGGCCGAGTTACTGCAGGTCAAGGGTCTCGTTGCCGGCAATGATTTTCCATCGACGAGTGAGCCAGTTACGTCACCAACACCAGCGGTCTGCAGTACCAGCAGTAATCGTAACGGCGATACGGCACAgcagaattacgaaaattttcgatcgaatgCGACACGTCGACGTTCGTCCGCTTTGCCATTTTCCGATGATATCAGAGCAACGAGTGATCATCAGGACATAGGGGAGGCCAAATTTTCGATACCCGCGTGGCCAATGTCCCAAATTTTTCCAACGGAAGATCAAAAATCTACGCTAGCGAGTTTGGCAAATTTTCATCCCTTTCTACCGACCCAAACATTCCCCTTTACCCAGCTTCGTGATAACGTTTCCGAATTAACGAGTGGCCAAAAATCCCGAAACAACGCGTCCGGCATTAATGCAACGAGGCATCAAGACACACCGATACTCAGGGCTGTGCTCAATCCCGATCACGAGGATGGATCTATGAGATCACCGATTAATCGTCAAGACTCGCATGATTCGCATTATCGAAATCGTAGCAACGGTTCGGCGAACAACGAGCCCAATGAGAGACGCGGCAGCATGGATTTGTCGCAGAGTCAGCGTGCGCACAGCTCATCGTACGAGACTGACGCAACGATGATGGACGAGGATGATAAGGGAACGACTGCTCAAAAAATTCCGGATGACAAGAAAGACGTGAGCCACGGTACGTCCCAGAAGTTGGCGAGCAAACGTTACAAAAATTACACGAGAAAAGACATATGGAACGCTATCGCGGCTGTGAAAGGAGGCTTGAGCGCGAACAAAGCTGCCGAATTGTTTAGGGTACCATCGAGAACGCTATATGATAAGATAAAGAAGCTCAGTGAGCCACCGATAAAGCACAAACGACGGAAAACCATCGATGCTCCTTCGAGCTCGCAACACGATACGACGATAGTTGGTAACGTGAGCAGCATTGGGTTGGCAGATATTTCGAAACACACGATCGAGAATAATCCAGTCACGATAGTCGAGACAACGTTGaacgaaattcatgaaaaatcgaacgatcCCGAGGAAACGAAGGAGGGCAGCCAAAACAGTTCGTATTCGGGTATTTATCGTGACAACGACAATGAGAACGAGGCAGAGGATCTCTCGGTGAGCCGCAATGTTCGCGTTATAGTTTCACCGAGCAGTAACGTCATTCAAGATACGGCATAG
- Protein Sequence
- MGASDRYCLRWNNHQTNFISVMDDLLKNQTLTDVTLGVEDGRFLKCHKIILAICSPYFHSLFIEVPSKNPIILLKDVKYTEIKAILEFMYKGEVSVAYDEMAALLQVAELLQVKGLVAGNDFPSTSEPVTSPTPAVCSTSSNRNGDTAQQNYENFRSNATRRRSSALPFSDDIRATSDHQDIGEAKFSIPAWPMSQIFPTEDQKSTLASLANFHPFLPTQTFPFTQLRDNVSELTSGQKSRNNASGINATRHQDTPILRAVLNPDHEDGSMRSPINRQDSHDSHYRNRSNGSANNEPNERRGSMDLSQSQRAHSSSYETDATMMDEDDKGTTAQKIPDDKKDVSHGTSQKLASKRYKNYTRKDIWNAIAAVKGGLSANKAAELFRVPSRTLYDKIKKLSEPPIKHKRRKTIDAPSSSQHDTTIVGNVSSIGLADISKHTIENNPVTIVETTLNEIHEKSNDPEETKEGSQNSSYSGIYRDNDNENEAEDLSVSRNVRVIVSPSSNVIQDTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01306630;
- 90% Identity
- iTF_01306630;
- 80% Identity
- iTF_01306630;