Rexs009871.1
Basic Information
- Insect
- Rhorus exstirpatorius
- Gene Symbol
- lola_1
- Assembly
- GCA_963564615.1
- Location
- OY751316.1:24939911-24948076[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-16 3e-13 49.6 0.0 2 42 419 460 418 463 0.94
Sequence Information
- Coding Sequence
- ATGTCTATGCAACAGTTCTGTTTACGATGGAACAATCATCAGCCAAATTTCATATCCGTCTTCTCGTCGCTGCTGAACAATGAGACTCTGGTGGACGTTACTTTGGCCGCCGAGGGTCGTCATCTTCAAGCTCACAAAGTCGTACTATCGGCGTGCAGCACATACTTTCAGTCCCTCTTCACCGTCAATCCCTGTCAGCATCCTATCGTCATTCTCAAAGATGTCAAATTCTCCGATCTCAAGATCATGGTTGATTTCATGTATTACGGCGAAGTGAATGTTTCCCAGGATCAATTGCCCTCGATAATCaagACTGCGGAAAGTTTGAAGATCAAGGGCCTTGCGGAGATGCACACAGCCTCTCTGACAAAGTGGCCAAGTGGAAATAGCGAAACCGGTGGTGTCGATCGCGGGGAGTCCTGTTCGCCGAGTCCCTCGCCTTTGTCGCCTTCATTTCGCAGGAAACGCTTGCGCAAAACATCGACCGGCTCTACGTCCGGCGGTTCTGCCGACAAAACCGAAGAAATAAACGAGATCACACTGGTAGCTACGAATATCGTTAAACCCGAACCGCACATTGTACCCCAAGAGGGAGGTGAAAATCTTAGGCGTCCCATGAACACGACCACCGATACACAAGGCAGCATTGACGAGGATCAAATATCCATTATGAGCAACATGGAAAGCAGTACAACGACAACGCCCGCTCAGAGCGAAGGTTCTTTGCAGGAAGTGAGTCACCAGACAGGCGGAAATATCGGTCACAGTTCCGTGTCTTCTCAGCCACCGGCCCACCAAGGATTGCAATGGACAATAATGGAGCATACGTATCCGCGTTTCGCTCTGTCCTCGTGTCAAACGAATCTGTCGGTCCAAGCTTCGTCGGCATTCACGACGCCCGAAATAACAGCGACATCGAGCATCAGCGAGCATCAGTATCAGTCGGGCGGTGGTACGAGCGCGACAGCGACGCCCGGCTGCGCACTGACGAATTATTCGAATTCATCGAGTCACGGATCGATGCAGCACGGTACGAGCAcaagcggcggcggcggtggaaATGGCAATGGCAATGGCAATGGTAATGGCAACGCCGGTGGCAATGGAAATGGCGGCGGTGGAAATAACAGCGGCGGAAATGTACAGGGCGGCGGGCCATCGCCGGGACCCGTGCAGTGTCCGAGCAATTGTCAGAGCCCTTGCGCGAGTCCGCAGGCTACGATAAAGCGCAAAAGATCGACGAATCCGCAGGcggatgaaaatttcataagagCCCTGGAGGCGGTGCGTTACGGTGGAATTGGTTTTTGCAAAGCCGCTCGAATGTTCGGCGTTAACAATCGTACATTGTGGCTCGAGTATAAAAAACGGGGCTATCCGAATAATCGTCCGAGCCTGAAGTCGCGGGTTAAGCAGGAGGCGAATtcatcgccgccgccgccgccggcCCCGACCGTTGCATCGTCGCAAAACGTAAATTCGCAGAGTCCAACGCCAATGGGACCTCCAACGACGCCTCACAGTACACACAATACACATCCTACTCACACGATGCTCACCGCTCACAGTCCTCATACAATGCTATCGGGTTATATCGACAACAGACACACGGATTATACACTGCCGAGCTCGACAATGCCGATCAATTTGCATGGCGTTAATTACAACTCTATGTGA
- Protein Sequence
- MSMQQFCLRWNNHQPNFISVFSSLLNNETLVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQDQLPSIIKTAESLKIKGLAEMHTASLTKWPSGNSETGGVDRGESCSPSPSPLSPSFRRKRLRKTSTGSTSGGSADKTEEINEITLVATNIVKPEPHIVPQEGGENLRRPMNTTTDTQGSIDEDQISIMSNMESSTTTTPAQSEGSLQEVSHQTGGNIGHSSVSSQPPAHQGLQWTIMEHTYPRFALSSCQTNLSVQASSAFTTPEITATSSISEHQYQSGGGTSATATPGCALTNYSNSSSHGSMQHGTSTSGGGGGNGNGNGNGNGNAGGNGNGGGGNNSGGNVQGGGPSPGPVQCPSNCQSPCASPQATIKRKRSTNPQADENFIRALEAVRYGGIGFCKAARMFGVNNRTLWLEYKKRGYPNNRPSLKSRVKQEANSSPPPPPAPTVASSQNVNSQSPTPMGPPTTPHSTHNTHPTHTMLTAHSPHTMLSGYIDNRHTDYTLPSSTMPINLHGVNYNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00629212;
- 90% Identity
- iTF_01306611; iTF_00798688; iTF_00798493;
- 80% Identity
- iTF_01306611;