Basic Information

Insect: Rhopalosiphum padi
Gene Symbol: -
Assembly: None
Location: scf7180000008562.380821:245005-248079[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.6 3.2e+02 2.6 0.8 2 11 129 138 128 139 0.91

2 17 0.06 7.6 7.7 0.1 2 23 152 171 151 171 0.80

3 17 0.016 2 9.6 0.6 1 23 183 206 183 206 0.97

4 17 0.17 21 6.3 0.5 1 20 247 266 247 268 0.94

5 17 0.071 8.9 7.5 0.8 2 17 274 289 274 295 0.77

6 17 0.12 15 6.8 0.6 2 23 306 328 305 328 0.94

7 17 1.2e-05 0.0015 19.4 0.4 2 23 335 356 335 356 0.97

8 17 0.00044 0.055 14.5 1.7 1 23 362 384 362 384 0.97

9 17 6.3e-05 0.0079 17.1 2.3 1 23 390 412 390 412 0.99

10 17 1.9 2.3e+02 3.1 0.0 3 23 425 446 423 446 0.88

11 17 0.04 5 8.3 0.3 2 23 471 493 470 493 0.92

12 17 0.004 0.5 11.5 1.5 1 23 504 526 504 526 0.97

13 17 0.0016 0.21 12.7 2.2 1 23 602 625 602 625 0.97

14 17 0.031 3.8 8.7 0.7 1 23 640 663 640 663 0.94

15 17 2.2e-05 0.0028 18.6 3.9 1 23 673 695 673 695 0.96

16 17 0.46 57 5.0 0.3 2 23 751 772 750 772 0.94

17 17 0.00034 0.043 14.8 1.0 2 23 785 806 784 806 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.6	3.2e+02	2.6	0.8	2	11	129	138	128	139	0.91
2	17	0.06	7.6	7.7	0.1	2	23	152	171	151	171	0.80
3	17	0.016	2	9.6	0.6	1	23	183	206	183	206	0.97
4	17	0.17	21	6.3	0.5	1	20	247	266	247	268	0.94
5	17	0.071	8.9	7.5	0.8	2	17	274	289	274	295	0.77
6	17	0.12	15	6.8	0.6	2	23	306	328	305	328	0.94
7	17	1.2e-05	0.0015	19.4	0.4	2	23	335	356	335	356	0.97
8	17	0.00044	0.055	14.5	1.7	1	23	362	384	362	384	0.97
9	17	6.3e-05	0.0079	17.1	2.3	1	23	390	412	390	412	0.99
10	17	1.9	2.3e+02	3.1	0.0	3	23	425	446	423	446	0.88
11	17	0.04	5	8.3	0.3	2	23	471	493	470	493	0.92
12	17	0.004	0.5	11.5	1.5	1	23	504	526	504	526	0.97
13	17	0.0016	0.21	12.7	2.2	1	23	602	625	602	625	0.97
14	17	0.031	3.8	8.7	0.7	1	23	640	663	640	663	0.94
15	17	2.2e-05	0.0028	18.6	3.9	1	23	673	695	673	695	0.96
16	17	0.46	57	5.0	0.3	2	23	751	772	750	772	0.94
17	17	0.00034	0.043	14.8	1.0	2	23	785	806	784	806	0.94

Sequence Information

Coding Sequence: ATGCCGGCTAACATAGGACCTAAGAAATTGAAGCGGATGTCCTTTCGGAAACCCCGGAAACGTCGCTACTGCGCGGTGTCGCGTCGTCACCGAACGTCGTTCGACTTGACGAATCAAGTGATCGTTTACTTCGAACCGGGAGGCAGCGGAAAATACGAAGTGGTTGGTGGCAGCACTCCTGGTCACGGCGGTGGTAACGAGCACTTCCCTGCGCGACAAAAGACGGTCGAACTCGACGTGACGCCGGTGGACGGGAACCGCAAGGGCAGGCCCAAAGGATCGAAAAATAAGTCGCCGCCGTCGACGTCGTCGCCATCGGGATCCAGCGCGTTCAACTACCGGTGCGAGAAGAGGTCGCTGACGTACACGTTCGCTGGTCCGGTCAAGTGCAAGTCGTGCGACCGGACGTTCAACGGCGACCCGGTGGCCCACTGTCTGGAGCATCACAAATCCGTGTGTCCCATATGCGGCCGCACGTACCGGCCACCGCTGTCCGCGCACATCAAGTCGCACGGGTCCCGGTACGTGTCACTGACTGTTTCTTGTTACGAGTGTTACGCGTGCAAGGAGAAGTTCGGTAACCATTCGACCATGGCCGAACACATACTGACCGTACACTCCGTCACGGCCGCCGAGTGTTCGCTGTGCGGTGCCGTGGCGTTCGAAACCGTCGGCGCGGCCGTCAATCACCTGGTAGACGCGCACTGTCCAAGGAAGACGTTCAGCCACCCGACCGTGTACCGGTGCCGAGTGTGCCTAGCCGGGTTCAAAACCCAGATCAACGTGCTGCGGCACGCGTGTAACAAGATCAAGTCTCCGCAATGCGGACAGTGCGGCAAGTCGTTCCCGTCCAAGATGCGGTACGCGTTTCACCTGCAGTTCCACGAACACCCGAAGTGGGCGACCATGCACCTGCACTGCGACTTGTGCCTGGCCGAGTTCGACGACGAGTATCAACTGTACGATCACATCCGGTTCCGGCACGAGCTGCACGACAAGGCTGTGTGTGAGGTGTGCGGCCGGACGTTCAAGTCGTCCATGGGTCTCAACATCCACCGCCGGTATCACACCGGGTCACGGGACTTTACGTGCAAGTCGTGCGACAAGTCGTTCTTGAACAAGTCCACGCTCCGGGAGCACGAGATCTCGCACATGGACGTCAAGCCGTTCCAATGTCACATATGCGGCCAGTACCTGAGCCGCGCGTCCAGGCTCCGGTCGCACGTCAAGACGCACCGGGCCGCCGAGTCGACCGAACAAACGTGTTACGGCTGCAGTGAATGCGGTTACGTGGCGCCCAACCCGGCCGCGGTCGCCGACCACTCCAGCAAGGAGCATTGCGGCGATGACGCACGCACGACGGCGGCAAACGAGTGTGGATGTTACGCGGTGCAACTGCCGTCGGTGGTCAAGTGCGAGTACTGCGACTCGACATATCTAGACGCAGTGCACTTGAACCGACACCGTGAAGCGGCGCACGCGGGCGGAGGATCTGGCGACGCGGAGGCGTTCATCTGCGTGGTGTGTTCGTCCACGTTCAGCACGTACTCCAGGTTGACCACGCACAAGTTGACGCACGGCATAAACATGGAGTCCTCCTGTAACGCGCCCGCTCAACAGCAACTTGACGAGCAACAGCAAAAACTACAGCAGCAACAGCAGATGCAACCCGCGCCTGACCAGGTCCCCGACCGGTTCGAAATACCGCAATTTTTCTCTTGTGAGCACTGCGCCAAGATGTGCTTGCACTACACGTACTTTTGCCTACACCGGCGGCTCAAACACCCGCCTGGCGTGCAGACGCACACGTGCGACCAGTGCGGCGTGGACTTTAAGACTTCCTGGAGACTGACGTACCACAAGAAAACCGCGCACGGGCACCCGGCGGCCGCGGCGGACGAGAAACCGACTGAGATGTTCAACTGTACAGTGTGCTCCCGGCAGTTCGTCAAGATTGGCGCGCTCAACCTGCACAAGACCCGCACGCACATCGACGCGGTCGGCGACGTGTGCAAGTACCTGTGTCACCAGTGTGGCAAGTTTTTCAGCTCAGAGTTTTCGCTCAAGTCGCACGTCAAGACGCACGAGTTCGTCATTGGTGGTTGCACCGACGAACACGCGCACGACAACACCAACGATTGCGACGAACCCGCCGCGATAGCGTCACAGACGGTGCAGGCGCGGCCGAATTACCGGCGGCGCACGTACCGGAAACAGGCGGTCGCCACAGCCGTACGTTCGGCCAAGAAGTCGTGTCCGTACTGCACCCATACGATCGAAGACGAGACGGCGTTCATCGAGCACGTCAACGGTCACATCCGGAGTTGCAATACCGTATTGCCGACGGGCACCGTTTGCGAGCTGTGCGATGAGCATTTCGCGGACTCCGCGCAACTCAAGCACCACCTGGACGACCACGTGAACGCGAACCAAGGCCTGCTGTGCCGGGCGTGCTACTCACCGTTCCTATCGGCGGCCACGCACGATGCGCACGTGGCCGCGGGATGCCAGTTCGCCGTGACGATGCCGGTCAACGCGATCGGGGACTCGGCCCTAATCGCCGTTACGTCCGACGTGAGGTTCTCCGACCCGTCCACCGATGCCGCCCCGGCCGACGTGAAATTCACAGAACCGTCGACCGATGCCGCCCCGGCCGACGTGAAGTTCACAGAACCGTCCACCGCTGCCGCCCCGGACGACGTGAAGTTCACAGAGCCGTCCACCGCTGCCGCCCCGGACGACGTGAAGTTCACAGAGCCGTCCACCGCTTCCGCCCCGCCCGACGTGAAATTCGTCGGCACGCCCGCCGCCCCGCAATCCGACGCCCGTCCGCTGATCGTCGACTGTTCAGAGATATTCGCCAAAGGCGACGCGGTCACGCCGTCGTCGGCCGAGCCACCGCTCTTCAAGGTGCCGCCAGCTGACGATAAATCCACGGAAACGTCCGTGATCGACGAGCTCCTGTCCATACTGTCCACGCCTCGCTCGTTGGCCGCGCTCGATAATATTGATATCCAACCGTCGGACGACATGACGTTGGACGCAATATTCAACAGCATCTCGGCCGCGGACTGA
Protein Sequence: MPANIGPKKLKRMSFRKPRKRRYCAVSRRHRTSFDLTNQVIVYFEPGGSGKYEVVGGSTPGHGGGNEHFPARQKTVELDVTPVDGNRKGRPKGSKNKSPPSTSSPSGSSAFNYRCEKRSLTYTFAGPVKCKSCDRTFNGDPVAHCLEHHKSVCPICGRTYRPPLSAHIKSHGSRYVSLTVSCYECYACKEKFGNHSTMAEHILTVHSVTAAECSLCGAVAFETVGAAVNHLVDAHCPRKTFSHPTVYRCRVCLAGFKTQINVLRHACNKIKSPQCGQCGKSFPSKMRYAFHLQFHEHPKWATMHLHCDLCLAEFDDEYQLYDHIRFRHELHDKAVCEVCGRTFKSSMGLNIHRRYHTGSRDFTCKSCDKSFLNKSTLREHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHRAAESTEQTCYGCSECGYVAPNPAAVADHSSKEHCGDDARTTAANECGCYAVQLPSVVKCEYCDSTYLDAVHLNRHREAAHAGGGSGDAEAFICVVCSSTFSTYSRLTTHKLTHGINMESSCNAPAQQQLDEQQQKLQQQQQMQPAPDQVPDRFEIPQFFSCEHCAKMCLHYTYFCLHRRLKHPPGVQTHTCDQCGVDFKTSWRLTYHKKTAHGHPAAAADEKPTEMFNCTVCSRQFVKIGALNLHKTRTHIDAVGDVCKYLCHQCGKFFSSEFSLKSHVKTHEFVIGGCTDEHAHDNTNDCDEPAAIASQTVQARPNYRRRTYRKQAVATAVRSAKKSCPYCTHTIEDETAFIEHVNGHIRSCNTVLPTGTVCELCDEHFADSAQLKHHLDDHVNANQGLLCRACYSPFLSAATHDAHVAAGCQFAVTMPVNAIGDSALIAVTSDVRFSDPSTDAAPADVKFTEPSTDAAPADVKFTEPSTAAAPDDVKFTEPSTAAAPDDVKFTEPSTASAPPDVKFVGTPAAPQSDARPLIVDCSEIFAKGDAVTPSSAEPPLFKVPPADDKSTETSVIDELLSILSTPRSLAALDNIDIQPSDDMTLDAIFNSISAAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01329253;
90% Identity: -
80% Identity: -