Rpad015476.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- Rfx2
- Assembly
- None
- Location
- scf7180000007894.624286:241388-280806[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.4e-05 0.0042 18.0 0.4 1 23 473 495 473 495 0.98 2 18 4.8 6.1e+02 1.8 0.1 1 11 501 511 501 514 0.87 3 18 0.00012 0.015 16.2 1.6 1 23 523 545 523 545 0.98 4 18 0.00014 0.017 16.0 1.2 1 23 559 581 559 581 0.98 5 18 6.1e-07 7.7e-05 23.5 1.6 1 23 706 728 706 728 0.97 6 18 4e-05 0.005 17.8 0.8 1 23 734 756 734 756 0.96 7 18 0.00012 0.015 16.2 0.3 1 23 762 784 762 784 0.98 8 18 9.6e-05 0.012 16.5 1.0 1 23 1638 1660 1638 1660 0.97 9 18 0.0076 0.96 10.6 1.9 2 23 1667 1688 1666 1688 0.97 10 18 8.8e-07 0.00011 23.0 4.1 1 23 1694 1716 1694 1716 0.98 11 18 0.00014 0.018 16.0 4.8 2 23 2238 2259 2237 2259 0.97 12 18 0.085 11 7.3 0.1 5 23 2269 2287 2268 2287 0.96 13 18 1.4e-05 0.0018 19.2 0.5 1 23 2293 2315 2293 2315 0.97 14 18 4.5e-05 0.0056 17.6 0.3 1 23 2321 2343 2321 2343 0.98 15 18 4.5e-05 0.0056 17.6 0.3 1 23 2349 2371 2349 2371 0.98 16 18 7e-08 8.8e-06 26.4 0.4 1 23 2377 2399 2377 2399 0.98 17 18 5e-07 6.3e-05 23.7 0.9 1 23 2405 2427 2405 2427 0.98 18 18 9.8e-06 0.0012 19.7 1.3 1 23 2433 2456 2433 2456 0.98
Sequence Information
- Coding Sequence
- ATGACTCGGATTATAAAAGATGTACAAAAAATGAAGAAGAAAAAGAAAAAAATCAAGCAGTTAACTAAAAATGAAATTTTATCTAATTATTCTGCGGACAATGCATTGAAACATAATACTCAGCTAATCACCACATCACCAAAAAAAATCACAGCATCCTGTGACAAATATTTGAATTTTGACAAAACAGGAGGTACCGATTTACTGAAAGATGAATTTTCAACTCATATTTCTATTGCAAATGTTTCAGAAGTAGAAAAAGGATTGACATTAAAAAGAAAATTAAAAGAAAAAAAGAAGAATAAAAGGGGAGATAAAAAGAAAATAAAAAATAATAAAAAAAATAAAAAAATAAAAGCTTCATTAAAGACAGATAAGTTTGATACTGAGACGTGTGATGAAATTAACAAGAATTTAAGTAAAGACATAATAGGCGCTACCAATTTAAGCAAAGATGAATTGACAACTTGTATTTCTATTTCTAATGTTTCAGAAGGAGGTAACATACAATTAACATTAAAAAAACATAAGAAAAAAATGAGAGATAAAAAAAAGGTACACGATAATAATAATTTTGACAACAATAAAGCTTTATCAAAGACAGAAACAAATCAAAATACTCTATCAAACGAAGACTGTAAAGTGGATTTTCATTTTAATGAATTCAAGAAAAAAGCTAATAAAGATAAAACTGTTACTAACATTAATACAAATATTAATTCTATAAATGAAGAGGAGTATACAAGGTTGAAAAGGATAATAAAAAAAATTAAAAAGGAAAAAAAAAAGAAAAACAATCAACAGGTTCAACTTATAAATAATTTAGAAAATGAAAATGACGCAATTCATTCAAAGAAGAGAGTTCAAAGTAAAAAAAATATGTGCTCTAAAATGCTTTTGGATTTAAATGAACCCTTCCAAAACAATCTCAATTATTTGGCTGATACTTCCTTGTGTACAGACTATGGTAATGCTTTATTAAAAAGTCAATCAAAAAAAATCAAAAAAAAATTTAAAAAATCTAAGATTGCAACTAAAGAAGAAACTGAGACGTCAAAAGATAAAACTAAACATAAAAATCATAAAAAAATGAAATACTTGAATAAAGTAATAACTGAAGATTATTCAAAAGAAATAAACATGGATACTGCTAAAATCAACAATACTTATAATTCAAGAATTTCAAAAATTCACGAGAATCCGCCCAAAATATTACAAAAATTATTAAAGAGGAAGAAGAAGAAAGCTTTAAAGGTCACGGATTATGCAGAAACAATGTCACAGAAAAAATCGAACAAACATAAACGACAGACGTTTGATAAGGAATATTCGGAAAACAATTACACTTGCTCAGTGGACATGGATAAGGAGACATACAATAGTAACGTTCATGATATTCACACCGGTGAAAAACCATACGCGTGCAACGTTTGTGAAAGTTCATTTACACAAAAATGGAATTTGGCTGTACATAAAAGAACGCACACCGGTGAAAAACCATATGCGTGCGAAGTTTGCGGACGATCATTACGATACATAAACTTTGCGAACACCGGTGAAAAACCATATGCGTGTAACGTTTGTGGACGATCATTTACGATACATAAAACTTTGGCTGAACACAAAAGAACGCACACCGGTGAAAACCATACAACGCACACCGGTGAAAAACCATACGCGTGCGAAGTTTGCGGACGATCATTTACGATACATAAAACTTTGGCTGAACACAAAAGAACGCACACCGGTGAAAAACCATATGGTGAAGTTTGCGGACGATCATTTACGATACATAAAACTTTGCTGATCACAAAAGAACGCACACCGGTGAAAAACCATATGCGTGCGAAGTTTGCGGACGATCATTTACGATACATAAAACTTTGGCTGATCACAAAAGAACGCACACCGGTGAAAAACCATATGCATGTGGCCATTGTGAAAAAAAGTTCTCAAGAAGCTCTAATTGCCGTAGTTAATGCAGAAACAATGTCGCCGAAAAAATTGAACAGACGTAAACGACAGACGACTGATAAAGAATATTCGGAAAGCAATAACCCTCGCTCAATGGACAATTTAGTAAATCATAAAAGAACGCACATCGACGAGAAACCATTTGCTTGCAACGTTTGTGGACGATCATTTACGCAACAATCACATTTGGTCGTACATAATAGAACGCATACCGGTGAGAAACCATATGCGTGCAAAGTTTGTGGACGATCTTTTTCGCTAAAAAGCAGTTTGGTTAAACATGATAGAACGCACACCGGTGATAAACCATATGCGTGCAACGTTTGTGAAAGTTCATTTACACAAAAATGGAATTTGGTTGTACATAATAGAACGCACACAGGCGAAAAACCATACGAGTGCGCAAATCATAATATTAATACACTTATATTATTTACAATAGGTTATTCCATGGCGATTTCGGTAAGGAGTAGAATCAAATTAGAAGAATCAGCTGGTACTAGCTCTCAAACTAATGCTATAACTGTTTTAAAAACTGGTGAGGTTGGTCAAACTCGTATCATACAACCAGTACAACAAACTTCTGTAAATATCAATAGTAATAGACAACTTGCAAATGCTATGCCATGTGGAATTAATACAGTTCATAATAATGTTTCTAATAAATTAATGGATGATGATAAACATTGCCTAGATCATAAAGATAGAAATTCTTCTACAGTTACTGTCAATAATGATCATTATGTTGTAGCAGCATTAGTTCCCAAAATAGAGCCTATTGATTCTGATGACATAGATTCTACTTATGTACAGTATGTTGAAGAAACTGGTAAACAAGCAATTTTCAAAAATGAACAAAATATGATGTACCCAATTTATACTGTGAATGAGAGTGGAACAATGTATCAAGCTGGTCAGACCCATTACACTCCAAGTACAAATTCTTATTCACAAGTTATAAACACCTTAGACCAACCAACATGTCATGCACAAATTATAAGTAATGGAACCTATATTGTACAACAGAACGTTGACAATTATCACACTATTATTTCTACTTCTCAAAGAGACAGCCCAAATTCTACTATATCTTCGGATATGTCATATCATACAGTAACCACTATTGACTCTGACATAACAAACACAAATATAGATCAATTGAATGATATCAAGTTAAATACGGTAATGCAAAACTCCAGTCTTACGCGCACAAATAAAATTTCTCCTGTAATTATTAACTGGCTGATGGAAAATTATGAAATGGCTGAAGGAGTGTCATTACTTCGATCAACAATATATAATCATTATTTAACACATTGCTCGAAAACTAAAATCGATCCGGTAACTGGACCATCATTTGGTAAAATTATCCGATCTGTGTTTATAGGATTACGTACAAGACGTCTTGGAACTCGAGGAAATTCCAAATATCATTATTATGGTATAAGAATTAAAGCTAGTTCATTATTAAATGACTTTAAAGAAGAAGAAAACCTACCAGATCAAACAAACCAAAATAGTAGTTCAAAAAATATTAAGTTTATTAACATGAAAGAGCAAAATTGCAATCAATACACCAATAACAGTTCAGATTCTACTAATTGTTCTCAAAACTTTATTCCATCTTCTCCTCAAGCACAAGACCAAGAATATTTAGGCGATGGTACTAATGTTGTACCAGAATTTCCTGATATTATATTGAATGAACTAGAATTGGATGATAATTGTACTTTAAAAGATGTAGATACATTCAAAAATTTGTACCGTGAACATTACGAAGCATTTTTAGGTGCTATATTGAATTTAGAATTTAACACTGTTGAGTCACTCTGGCGTCAATTTTGGTGTAGTCAAAATAATAATAACGATGAATGTGAAGAAAAAAAATGTTTATCTAAAAAAAAGTTATATTCATTGTCTAAGTGCAAAACATTGCAACTATTTGTGAAAACTGCTGACTTTCTATTTTATCAAAACTTAGTGAAAGTTTTAATTCCAGATGTTCTTCGGCCTGTTCCTAAAACATTAACACAAGCCATTAGACATTTTTCCAAAGGTGTAGAGTCATGGCTTATTTCGGCAATGCAGGGATGCCCAGAAGAAATGATCTCCATAAAAGTGACTGCTGTTAGAACCTTTGCACAAACATTGCGTAGATATACTACTGCAAGAGCTGTGCTTCAAAATTATACCCAAATAAATCAAATGCTTACTGATTTGAATCATGTGGACATCCGTAATATACAAGAACAAGTTCAACTAATAAGTACTTTGGGAAGTGAAAATGATTCAGTTTATACAAAGAAGAGAGTTTATAGTAAAATAAATGAATGCTCTGAAATGCTTTCGGATTTTAATGAACTCTCTAAAAAAACAAAAACTCACAACTATTCGGCCACTACTTCTACAGATACAGAATGTTTTAATGTCTTAGTAAAAAATCCATCTAAAGAAACCAACAACAATAAATCTAAGATGGAAATAAAAGAAGAAATACAGTTGAAAGATGAATTTGAACAAAAACATAATTTAAAAATAGAATACTTGAAAGAAGATATATTTGAAGATCATACACAAGAGATTTACAATGATACTGCTATGATTAACTCTTCTTACAATCCAAGTATTTCAGAAGTCCATAAAGAGTACCCTAAATTATCTCATAAATTATCAACAAAACAAAAGAATGAACAGAAAATAATAATTAAGGCGGAAATAATGTCACCGATCAACACAAATAAACGTAAACGACAGACAACTGATAAAGAATTAGAATATTCGAAAAACGATTTATCTCGATCAGTGGACTCGGGTGAGGAGGCATGTGGATATGATAGTAATAATCGTTTTGGTGATTACAGTGAAGATAATTTTGAATTTTTCGCTGCTCAAGAAGATTACAAGTCGGAATATCCCACTATGGCCTACACAAGTCTGTTTTCTTGTCGGTTTTGCGACAAAGAATTTAGCAACGCCAATAGCTTATCCAGACACGAAAATGTTCACACTGGAAAAACTCCTATCGAGTGTGACGTCTGCTTTAAAACGTTTATCAGCAAATCCATATTGTGTATACATAAAAGATCGCATACCGGAGAGAAACCATATGCGTGCAACGTTTGTGGCCGATCGTTTACGCAAAAGTCACATTTGGTTTTACATCATAGAACACACACAGGCGAAAAACCATACAAAAACAAATTGAGAAAAATGGCTACAATAAAAGAAGATTATGAAATAATAACAAATCTCATAAAACAAGAAATCGACAAACGTAAGAAACAAAAACAAAGCAAAGAAAATTTAAAAAATATTGAGGAAGATATATCATTATTAAATAAGACTGAAAAAAAAATGAAGAAAAAAAAGAAAAAATCTAAGACATCATCCCAATTAACCACAATATCACCAAACAAAAAGTGTTGTACTAAAATCTATGATTACAATGACAAGTATTTGAATAAAGACAAAACAGAGGCTTCCAATTTAATCAAAGATGAATTGACTAATTGTATTTCTATAGCAAATGTTTCAGAATGTGTTAATGAATTAATGTTATTAAAAAAAAAAAAGAAAAAAAAAAAAAAAGGAGATAAAAATAAGGTACAAAATGATATACATTTGAAAAACTATAATGCTACATTGAAAAGAGAAAAGAGTTATACTGAGACTTGTGATGACAATAAAAAGCATTTGAAAAAAAAAAAATTAAGGGCTTCTTATTTAAACAAAGAAATATTGACAAGTTGTGTTCCTATTGGTAATGCTTTAGAAGTTGACAAAGGATTTATATTATCAAAAAGAAAAAAGAAAAAAAAGAAGAAAGATGTAATAAAGGTACAAACTGATAAAAATTTAAAAAATGATTATGTTACATTGAAGGCAGAAAAGCTTTATATTAACACATGTGATGACAATGACAAGTATTTAAATAAAAACAAAACAGGGGCTTCCGGATTAATCAAAGATGAATTGACTAGTAGGGTTTCCATTGCAAATGATTTGGAAGGAAACGAAGAATTAACTTTATTTAAAAAAAAGAAGAAGAAAAAACGCAATAAAAAAAAGTTGGATAATGAAAATGCTACATTGAAGATAGAAAAAAGCGATCAGCTTCGATCTAGTGTTGACAGAAAATTAACTTCTTTCTGTATGAATGAACACAAGAAAACAATTCATAAAGTTGATATGAATAAAACTGTTAATAGCATTAATATGAAGACTAGTCCAATAAATTACGAAGAGTATACAACAAAATTAGAAAGTTTATCAAAAAAAACCAAGAAGAAAAAAGAATATAAAATTGAAAAAAAAGAAGAAACTAAACATAAAAATCCTAAAAAAATGAAACAAGATATATATCAAGGTCAATTAAAAAAAAATTACAATTATGATAAGGATATGATCAACACTCTTCATAATTCAAAAATATCAAAAGTTCATGATGTGTACCCAAAATTATTACATAAATTATCAAAAATACAAAAGAAGGAACAAAGAAAAGCCATTAAGGCCGTTGTTTGTGCAGAAACACTGTCACCAGAAAAATCGAACAAGCGTAAACGACTGACGACTGATAAGGAATATTCGGAAAACAATTACTCAGTGGACATGGATAAGGAGGCATACGATAGTCATGTTCGTATTTCAAGTGAAGACGGCAGAAGAGATCATGAAATTGAAGAGTTAAACAACGTACCAAGTCACGGAAATGTTCATATTGGAAAAAGTTCTCTCAGTTGCGACATCTGCTTTAAAATTTTTACCAACAACTCTAAATTATGTCGACATAAAAAAACACACACTAGTGAAAAATCATATGCCCGCAATGTTTGTGGAAGATCATTTGCGAAAAACGATATTTTGGTTAAACATAATAGAACGCACACCGGTGAAAAACCATATGCGTGCAACGTTTGTGAAAGATCATTTAGGACACAATCAGATTTGGTTCTACATAATAGATCGCACACCGGTGAGAAACCATACGCGTGCAACGTTTGTGGACGATTATTTTCGCTAAAAAGCAATTTGGTTGTACATAATAGAACGCACACCGGTGAGAAACCATACGCGTGCAACGTTTGTGGACGATTATTTTCGCTAAAAAGCAATTTGGTTGTACATAATAGAACGCACACCGGTGATAAACCATACGCGTGCAACGTTTGTGGAAGGTCATTTACACAAAATTCAGATTTGATTGTTCATTATAGAACTCACACCGGTGAGAAACCATATGCATGCAACGTTTGTGGAAGGTCATTTACACAAATTTCAACTTTGAATAATCATTATAGAACGCACACAGGCGAAAAACCATACGAGTGCGGTCAGTGTGAAAAAAAGTTTACAACAAGCGGTAATCGTACAAGACATATACGTAGAATTCATTTCAAATGTTTTTAA
- Protein Sequence
- MTRIIKDVQKMKKKKKKIKQLTKNEILSNYSADNALKHNTQLITTSPKKITASCDKYLNFDKTGGTDLLKDEFSTHISIANVSEVEKGLTLKRKLKEKKKNKRGDKKKIKNNKKNKKIKASLKTDKFDTETCDEINKNLSKDIIGATNLSKDELTTCISISNVSEGGNIQLTLKKHKKKMRDKKKVHDNNNFDNNKALSKTETNQNTLSNEDCKVDFHFNEFKKKANKDKTVTNINTNINSINEEEYTRLKRIIKKIKKEKKKKNNQQVQLINNLENENDAIHSKKRVQSKKNMCSKMLLDLNEPFQNNLNYLADTSLCTDYGNALLKSQSKKIKKKFKKSKIATKEETETSKDKTKHKNHKKMKYLNKVITEDYSKEINMDTAKINNTYNSRISKIHENPPKILQKLLKRKKKKALKVTDYAETMSQKKSNKHKRQTFDKEYSENNYTCSVDMDKETYNSNVHDIHTGEKPYACNVCESSFTQKWNLAVHKRTHTGEKPYACEVCGRSLRYINFANTGEKPYACNVCGRSFTIHKTLAEHKRTHTGENHTTHTGEKPYACEVCGRSFTIHKTLAEHKRTHTGEKPYGEVCGRSFTIHKTLLITKERTPVKNHMRAKFADDHLRYIKLWLITKERTPVKNHMHVAIVKKSSQEALIAVVNAETMSPKKLNRRKRQTTDKEYSESNNPRSMDNLVNHKRTHIDEKPFACNVCGRSFTQQSHLVVHNRTHTGEKPYACKVCGRSFSLKSSLVKHDRTHTGDKPYACNVCESSFTQKWNLVVHNRTHTGEKPYECANHNINTLILFTIGYSMAISVRSRIKLEESAGTSSQTNAITVLKTGEVGQTRIIQPVQQTSVNINSNRQLANAMPCGINTVHNNVSNKLMDDDKHCLDHKDRNSSTVTVNNDHYVVAALVPKIEPIDSDDIDSTYVQYVEETGKQAIFKNEQNMMYPIYTVNESGTMYQAGQTHYTPSTNSYSQVINTLDQPTCHAQIISNGTYIVQQNVDNYHTIISTSQRDSPNSTISSDMSYHTVTTIDSDITNTNIDQLNDIKLNTVMQNSSLTRTNKISPVIINWLMENYEMAEGVSLLRSTIYNHYLTHCSKTKIDPVTGPSFGKIIRSVFIGLRTRRLGTRGNSKYHYYGIRIKASSLLNDFKEEENLPDQTNQNSSSKNIKFINMKEQNCNQYTNNSSDSTNCSQNFIPSSPQAQDQEYLGDGTNVVPEFPDIILNELELDDNCTLKDVDTFKNLYREHYEAFLGAILNLEFNTVESLWRQFWCSQNNNNDECEEKKCLSKKKLYSLSKCKTLQLFVKTADFLFYQNLVKVLIPDVLRPVPKTLTQAIRHFSKGVESWLISAMQGCPEEMISIKVTAVRTFAQTLRRYTTARAVLQNYTQINQMLTDLNHVDIRNIQEQVQLISTLGSENDSVYTKKRVYSKINECSEMLSDFNELSKKTKTHNYSATTSTDTECFNVLVKNPSKETNNNKSKMEIKEEIQLKDEFEQKHNLKIEYLKEDIFEDHTQEIYNDTAMINSSYNPSISEVHKEYPKLSHKLSTKQKNEQKIIIKAEIMSPINTNKRKRQTTDKELEYSKNDLSRSVDSGEEACGYDSNNRFGDYSEDNFEFFAAQEDYKSEYPTMAYTSLFSCRFCDKEFSNANSLSRHENVHTGKTPIECDVCFKTFISKSILCIHKRSHTGEKPYACNVCGRSFTQKSHLVLHHRTHTGEKPYKNKLRKMATIKEDYEIITNLIKQEIDKRKKQKQSKENLKNIEEDISLLNKTEKKMKKKKKKSKTSSQLTTISPNKKCCTKIYDYNDKYLNKDKTEASNLIKDELTNCISIANVSECVNELMLLKKKKKKKKKGDKNKVQNDIHLKNYNATLKREKSYTETCDDNKKHLKKKKLRASYLNKEILTSCVPIGNALEVDKGFILSKRKKKKKKKDVIKVQTDKNLKNDYVTLKAEKLYINTCDDNDKYLNKNKTGASGLIKDELTSRVSIANDLEGNEELTLFKKKKKKKRNKKKLDNENATLKIEKSDQLRSSVDRKLTSFCMNEHKKTIHKVDMNKTVNSINMKTSPINYEEYTTKLESLSKKTKKKKEYKIEKKEETKHKNPKKMKQDIYQGQLKKNYNYDKDMINTLHNSKISKVHDVYPKLLHKLSKIQKKEQRKAIKAVVCAETLSPEKSNKRKRLTTDKEYSENNYSVDMDKEAYDSHVRISSEDGRRDHEIEELNNVPSHGNVHIGKSSLSCDICFKIFTNNSKLCRHKKTHTSEKSYARNVCGRSFAKNDILVKHNRTHTGEKPYACNVCERSFRTQSDLVLHNRSHTGEKPYACNVCGRLFSLKSNLVVHNRTHTGEKPYACNVCGRLFSLKSNLVVHNRTHTGDKPYACNVCGRSFTQNSDLIVHYRTHTGEKPYACNVCGRSFTQISTLNNHYRTHTGEKPYECGQCEKKFTTSGNRTRHIRRIHFKCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305282;
- 90% Identity
- iTF_01305282;
- 80% Identity
- iTF_01305282;