Rpad001368.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum padi
Gene Symbol
-
Assembly
None
Location
scf7180000008018.598129:493926-499491[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0017 0.22 12.6 3.8 2 23 138 159 137 159 0.95
2 23 8.2e-06 0.001 19.9 0.2 1 23 194 216 194 216 0.98
3 23 1.1e-06 0.00014 22.6 0.4 1 23 222 244 222 244 0.97
4 23 1.4e-05 0.0018 19.2 0.7 1 23 250 272 250 272 0.98
5 23 0.24 30 5.9 3.9 1 23 278 300 278 300 0.95
6 23 8.8e-06 0.0011 19.8 0.4 1 23 306 328 306 328 0.98
7 23 0.00079 0.099 13.7 0.8 1 23 344 366 344 366 0.97
8 23 1.8e-05 0.0023 18.8 0.8 1 23 372 394 372 394 0.98
9 23 3.8e-06 0.00048 21.0 3.1 1 23 400 422 400 422 0.98
10 23 1.7e-07 2.1e-05 25.2 1.8 1 23 427 449 427 449 0.98
11 23 0.0012 0.15 13.1 3.2 1 23 455 477 455 477 0.95
12 23 4.3e-07 5.4e-05 23.9 0.6 1 23 483 505 483 505 0.98
13 23 0.00021 0.027 15.5 1.9 1 23 511 533 511 533 0.97
14 23 5.4e-05 0.0068 17.3 2.2 1 23 539 561 539 561 0.98
15 23 0.0023 0.3 12.2 3.4 3 23 569 589 567 589 0.98
16 23 3.8e-05 0.0048 17.8 1.6 1 23 595 618 595 618 0.97
17 23 8.3e-07 0.00011 23.0 3.2 1 23 628 650 628 650 0.99
18 23 5.1e-05 0.0064 17.4 4.2 1 23 656 678 656 678 0.99
19 23 0.06 7.5 7.8 2.2 1 18 684 701 684 701 0.93
20 23 4e-06 0.0005 20.9 3.0 1 23 715 737 715 737 0.99
21 23 1.2e-07 1.5e-05 25.7 0.5 1 23 743 765 743 765 0.99
22 23 0.01 1.3 10.2 4.7 1 23 771 794 771 794 0.96
23 23 0.00047 0.06 14.4 0.6 1 22 799 820 799 820 0.96

Sequence Information

Coding Sequence
ATGGAACAGTCAAGAACAAGCATAGGTAATTCTGCGATAAATTTAAAGTATAATTATGTATTAAACAGTTCTAAAATGTTGACAATTCCACATGTAAGATGTGATAATATGATAAATACAATTATAAACCAGAAAATTATTGATGAAACCAATTATAATAATGATTACCCACTAGGAACTATTAAACAAGAATTTATTGATGAAACCAACCATAATAATAGTAAATTAGTACAATTAAGAACTATTTGTCCTAAGGAAAAAGTAAATACAAATGATGCTGAAATTAAAATTGAAAATGATGTTATCGAGAATTGTGAATTTGAAGGAATGATTTCAATTAAAAGCCACTCTTTAGAAATCATTAATTGTTTGAATTCCAGAAAGAGATCCAACTTAAGCGAAAAAACTTTAACATGCAAAGTGTGTAATAAGATATTTTATAATTCATACAAATTTAAACTCCATAAGAAATTTCACACTGGAGATAATTCTCAGAAACGGAACATTTTTAGTAAACCATTAAAAGTAAAAACAGATCTCATAACACGTGTAAAGATTTATTCAGGAGAAACGCGGAAATACACATGTGATGTTTGTCAGAGAGCTTTTAAGGTAAAAACAGATTTGGCAAGACATGTGATGATTCATACGGGAGAAAAACCCTTCAAATGTAATGTTTGTCCTAAAGCTTTTATTAGATCAACTGATCTAAAGTACCATATGGTGATTCATAACAGGGACAGTCCTCACAAGTGCGACGTGTGTAAAAAAATATTTGCTATGGCAAGTAGATTAAAGGCACATATGATGATTCATTCTAATAACAAGCCTCATAAATGCATTATCTGTAGTTGGGAATTTTATCAATCACATCGTTTAAAAGAACATAATAGGATTCACACCGGTGAAAAACCTTTCAAATGTGATGTTTGTGATAAAGCGTTTGCTATATCTTCTTCTCTGACATTGCACAAGAGACTTCATACTGCCTTGGGAATTCATAAAAGACTTTATAGCGGAGAAAAGCCATTTAAATGTGACATATGTCATCAAGCATTTGTTCAAAGTTCAATTCTCACATTGCATAAAATAATACATACTAGGGATAAGCCTTTTAAATGCAACATCTGTTTGAAAACATTTATTAATAAAGCAAGTATCAAAATTCATATGAGTTCTCATACTGGATATCTGCCTCACAAATGTAATGTTTGTAATAAATCGTTTGCTTCAAATTCAAGATTTAACATTCATATGAAAATACATTCTGGAAAAACTTATGAATGTGACATTTGTAAAAAATCATTTTATACAAAATCAAAATTGAAAACTCACATTATGATTCATACAGGAAACAAACCTTACAAATGCACAGTCTGTTTCAAAACATTTATTACGAATTCAAAACTTAAGTTTCATAAATTAGTCCATACAAAAGAAAAGCCATATAAATGTGATATCTGTCCTAAAGAATTTGGTAGATCATCCCAACTTAAGTACCATATGATGGATCATAATGGAGAATTTCCTCATAAATGTGATGTATGTGCAAAAAAATTTGTAACACGCTCGAGATTAAATTATCATATGGTTGTTCATTCTGCAAACATGCTTTATACATGCAATATCTGTGACAAAGGATTTAATCAATTGAATACTTTTAAATTGCATAAAATGAAACATTCCAATGAAAAACCTTATGGATGCAAACTATGTAATTATAGATGTACTACATCTACAGCTCTAAAAATTCATAATAGAACTCACACCGGAGAAAAACCCTATAAATGTGACAAATGCGATCAAGCATTTATTTCAAGTTCATATCTGGCTTATCATAAGAATAAGAAACATACAATTATTGATCCTGAGAATAAGCCTTATAAATGCAGCATCTGTGATAAAACATTTTTCCAAGCTGTACATTTAAAAACACATACTAGGATACATACTGGTGAAAAGCCTTATGAATGCAAACAATGTAATTATAGATGTACTACATCTTCGGCATTAACAATTCACAAGAGATCTCATACTGGGGAAAAGCCTTTTGCATGCAAAATATGTAATTATAGATGTAGTACACTTTCATCTTTAAAACATAAGAAGCAACACTTAAATATTCGTCCTGCAGACAAGCCTTATAAATGCAGTACCTGCGATAAAGCATTTTTCCAAGCTGTACATTTAAAAACACATACTAGGATACACACTGGTGAAAAGCCTTACAAATGTGAAGTTTGTGATAAAGCAATAAGATCATCGTCTTCTTTGAAAGTGCACATGAGAACTCATACGGGTGAAAAGCCTTATGAATGCAAAACATGTGATTTCAAATGTTCTTCACCTGCAGCTTTAAGATATCATACTAAAGAATGTCATACTGGAGGGCCTTATAAATGTAACTTATGTAATCAAGATTTTGTGTCAAGTTCAATTCTAAAGAGACATATTAAGAAATAG
Protein Sequence
MEQSRTSIGNSAINLKYNYVLNSSKMLTIPHVRCDNMINTIINQKIIDETNYNNDYPLGTIKQEFIDETNHNNSKLVQLRTICPKEKVNTNDAEIKIENDVIENCEFEGMISIKSHSLEIINCLNSRKRSNLSEKTLTCKVCNKIFYNSYKFKLHKKFHTGDNSQKRNIFSKPLKVKTDLITRVKIYSGETRKYTCDVCQRAFKVKTDLARHVMIHTGEKPFKCNVCPKAFIRSTDLKYHMVIHNRDSPHKCDVCKKIFAMASRLKAHMMIHSNNKPHKCIICSWEFYQSHRLKEHNRIHTGEKPFKCDVCDKAFAISSSLTLHKRLHTALGIHKRLYSGEKPFKCDICHQAFVQSSILTLHKIIHTRDKPFKCNICLKTFINKASIKIHMSSHTGYLPHKCNVCNKSFASNSRFNIHMKIHSGKTYECDICKKSFYTKSKLKTHIMIHTGNKPYKCTVCFKTFITNSKLKFHKLVHTKEKPYKCDICPKEFGRSSQLKYHMMDHNGEFPHKCDVCAKKFVTRSRLNYHMVVHSANMLYTCNICDKGFNQLNTFKLHKMKHSNEKPYGCKLCNYRCTTSTALKIHNRTHTGEKPYKCDKCDQAFISSSYLAYHKNKKHTIIDPENKPYKCSICDKTFFQAVHLKTHTRIHTGEKPYECKQCNYRCTTSSALTIHKRSHTGEKPFACKICNYRCSTLSSLKHKKQHLNIRPADKPYKCSTCDKAFFQAVHLKTHTRIHTGEKPYKCEVCDKAIRSSSSLKVHMRTHTGEKPYECKTCDFKCSSPAALRYHTKECHTGGPYKCNLCNQDFVSSSILKRHIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-