Rpad021836.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000009497.34774:28074-30078[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00027 0.19 12.3 3.3 2 41 16 51 15 53 0.90 2 14 0.061 44 4.7 0.3 18 30 59 72 55 81 0.79 3 14 5.2 3.8e+03 -1.5 0.9 18 39 87 105 83 112 0.77 4 14 0.011 7.8 7.1 0.8 6 37 104 136 99 136 0.76 5 14 0.003 2.2 8.9 2.1 9 40 135 162 127 165 0.79 6 14 0.02 15 6.2 0.4 13 41 166 191 161 193 0.81 7 14 0.00088 0.64 10.6 3.2 4 36 186 219 184 220 0.77 8 14 0.035 26 5.5 1.6 13 30 222 240 214 250 0.73 9 14 1.9 1.4e+03 -0.1 2.9 16 29 253 266 243 274 0.74 10 14 0.096 70 4.1 3.4 8 38 274 300 268 305 0.74 11 14 0.0066 4.9 7.8 2.0 12 41 305 331 295 334 0.81 12 14 0.0072 5.3 7.7 0.6 17 41 338 359 332 361 0.87 13 14 0.2 1.5e+02 3.1 0.5 18 38 367 384 363 389 0.75 14 14 0.016 11 6.6 0.2 19 41 396 415 391 417 0.92
Sequence Information
- Coding Sequence
- ATGTCAACAACATCTGATACGTGTAAAGTGTTTTCTCAAGCGGGAAATTTAAAACAGCATATAGCAACACATTCTAAAGAAAAGTCATATAAATGTAGTATCTGTTATAAAGGGTATACTCGAAAAATAAATTTAATAGCGCATATTAGAACACATACAGGAAAAAGGCCATATAAATGTGATATCTGTAAAAAAGAGTTTTCTACAAGACCACATTTAATATCACATACAAGGACACGTACAGGAGATGGGCCATTTAAATGCTGTAACTGTGGTAAATTGTTTGTTAAAGCTGAAGCACTAAAAAGGCATATAAAGATACATAGTGGAGAAAGGCCATATAAATGTGATATCTGTGGTAAACAATTTATTAGATTGGATAGTTTAAAAACCCATACAATGATACATACTAGAGAAAAGCCATATAATTGTGCAATCTGTAAAAATGAATTTTCTTCAAGAACAAATTTAATATCACATACAAGGACACATACACAGGATACACCATATAATTGTGATATCTGTGGTAAACTATTTGCTCTAGCTGGAACACTAAAAAGGCATTTAAGGACGCATAGTGGAGAAACGCCATATAAATGTAATATCTGTGGTAAACAATTTACTAGAGTGGAAAGTTTAAAAATCCATACAATGATACATACTAGAGAAAAGCCACAGAAATGTGCAATTTGTAAAAAAGAGTTTTCTACAAGAGCACATTTAATATCACATACAAGGACAAATACAGGAGATAAGCCATTTAAATGTTGCATCTGTGGTAAATTTTTAGTTGAAGCTGGAACACTAAAAAGGCATACAAAGATACATACTGGAGAAAAGCCACATAAATGTGCAATCTGTAAAAAAGAGTTTTCTACAGTTTCATATTTAATAACACATACAAGGACACATACAAAAGAAAGGCCATATAAATGTGATATCTGTGGTAAATTGTTTGCTCTAACTGGAACACTAAAAAGGCATATAAGAACACATACAAGAGAAAGGCCATATAAATGTGATATCTGTGGTAAATTGTTTGCTCTAACTGGAACACTAAAAAGGCATATAAGGACACACAGTGGAGAAAGGCCATATAAATGTGCAATTTGTAAAAAAGAGTTTATTACAAGAGCAAATTTAATATCACATACAAAGACACATACTGGAGAATTGCCATATTTATGTGATATTTGTGATAAAGGGTTTTCTCTTAAAACAAATTTAATTAAGCATATAAAGAAACACACAGGAAAAAAATCCGTATAA
- Protein Sequence
- MSTTSDTCKVFSQAGNLKQHIATHSKEKSYKCSICYKGYTRKINLIAHIRTHTGKRPYKCDICKKEFSTRPHLISHTRTRTGDGPFKCCNCGKLFVKAEALKRHIKIHSGERPYKCDICGKQFIRLDSLKTHTMIHTREKPYNCAICKNEFSSRTNLISHTRTHTQDTPYNCDICGKLFALAGTLKRHLRTHSGETPYKCNICGKQFTRVESLKIHTMIHTREKPQKCAICKKEFSTRAHLISHTRTNTGDKPFKCCICGKFLVEAGTLKRHTKIHTGEKPHKCAICKKEFSTVSYLITHTRTHTKERPYKCDICGKLFALTGTLKRHIRTHTRERPYKCDICGKLFALTGTLKRHIRTHSGERPYKCAICKKEFITRANLISHTKTHTGELPYLCDICDKGFSLKTNLIKHIKKHTGKKSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305840;
- 90% Identity
- iTF_01305840;
- 80% Identity
- iTF_01305840;