Rpad010861.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000009498.32630:12438-14253[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.9e-08 0.00011 22.4 0.0 6 37 20 51 19 54 0.95 2 3 5.2 6.2e+03 -2.5 0.1 24 29 82 87 82 87 0.88 3 3 1.5 1.7e+03 -0.7 0.0 14 24 159 169 155 170 0.80
Sequence Information
- Coding Sequence
- ATGATCAGAAATTATAAAAGAAAAACCAATTTTGGAACTACACCTCAACATATTTATGACAAAGCAGTAAAAGAAGTAAATGATGGTAACATGACACTGAGAGCTGCAGCTAAAAAATATAATGTCAATGTGATGACTTTACAGCGATACAAAATTAAAATATCTGATCCTAGTGAATCTTTTAAAATAGCCATACATAAATTTAGTGATTCATGGATGAGAAATAATCATGGTAGACCAGTGTCTATCTATGATATTCCATTAATTGTTAAACAGGCATTACCCGTGGCTGCAACTATGTCTAATATTCAATCTGGGTTTAGAGTATCTGATACCCCTGAAAAAGAAAAAATCCAAAATGAACATAATGCTAGAGAAGAAAAGAAAAACAAGGTCAAACCAATAATAGTATGCAAAAAATTAAAATTTGATAAACGAGATGACTCAGAGGATGAAACATTTTGTCTGATGTGTAATGGACCATATTCTCAATCAAAAGCTTCGGAAAAAGATTGGATTCAATGCTTACAATGTAAACTTTGGGCACATGTGAAGTGTACAACTAAAAAAAATCTATTAACTTTTACCTGTGCAATATGCTTAACAGACTAA
- Protein Sequence
- MIRNYKRKTNFGTTPQHIYDKAVKEVNDGNMTLRAAAKKYNVNVMTLQRYKIKISDPSESFKIAIHKFSDSWMRNNHGRPVSIYDIPLIVKQALPVAATMSNIQSGFRVSDTPEKEKIQNEHNAREEKKNKVKPIIVCKKLKFDKRDDSEDETFCLMCNGPYSQSKASEKDWIQCLQCKLWAHVKCTTKKNLLTFTCAICLTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -