Rpad006670.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000008237.51806:28368-30189[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-11 2.8e-08 33.9 0.0 2 38 16 52 15 57 0.91 2 2 6 7.2e+03 -2.7 0.0 21 28 176 183 176 184 0.92
Sequence Information
- Coding Sequence
- ATGGTTAGAAATTATATTAGAAAAACTGATAGGCAGTCTTGGGATGAAAAGTCTATGGAAAATGCGATCATGGCATGTTACAATAAAGAAATGGGCTATAGAAAAGCTGCAGTTTCTTTTAATGTGCCACAATCTACCTTAGAAAGAAGATTGAAAAAGTATAAAGATACTGGAGATCCAGGAAAAAAAAGATTAGGTGCTTTTAAAACGGTTTTCAATGAGGAACAAGAAAATCAACTTGTTAATTATATTAAAGCAATGGAAGCTCGTTTGTTTGGTCTCACTACAAAAGAAATTCGGCTTTTGGCATATCAACTTGCAGAAAAAAATCAAATAAACCATCCATTTGCCAAAGAAAATGATCAAGCTGGTTTAGATTGGATGTACAATTTTATGAAAAGACATCCAGATTTGTCAATTCGTAAACCTGAAGCTACATCAGCTGCTCGAGCTTCAGGTTTCAATCCTACAGCAGTAGGTAAGTTTTATACCCTACTATCTGGTATAATAGATACTCATAAGCTTCAAGCTTCGCAAATATACAATGTCGATGAAACCGGTATTACTTGTGTACCAAAAACACAAAGTAAAGTAGTTGCATGCCGTGGACGTCGACAAGTAGGTGCTTTAACTTCTGCAGAAAGAGGACAAACTGTTACTGTCGAAATATGCATGTGTGCCGATGGTTCATTTATGCCCCCTATGTTAATATTTCCCCGTGTAAGATCAAAACCAGAATTAATTGATGGAGCTCCACCTGGTTCATGGGCAGAAGTCCACCCTAGTGGATGGATTCAGAGTGATTTATTTTTAAAATGGTTTGAAAAGTTTATTGTGTTTTCTAGAGCTTCTAATACCAATAGAGTATTACTTTTGCTTGATGGCCATGCTACCCACACAAAAAACATTGCACTTATAGATAAAGCACGTGAAGCTGGTGTTATTTTACTTTGCTTCCCTCCACACTGCACCCATAAGCTTCAGCCCTTAGACGTTGCTTTTATGAAACCTCTTAGCATTTACTATTGTGATGAAGTGAAAAAATGGTTAAGAGAGCATGCTAGTGAGCACAGAGTAGTAACGCGTTATCAAATCGCATCACTTCTAGGTAAAGCATACTTAAAAGCTGCTACAATGACTACTGCTATAAATGGCTTTAAAGCTACTGGCATATGGCCACTAGATCCTAATAATTTTAATGAATCGGATTTCTTAGCTAGTGCTACAACAGAAATAGAGTTGGAAAATCAAGAAAAAGATGGTTCAATTGAGGAAAATATACCACATACATCAACATCTTCACCAGGCTACACTAATAGTAATAAAACAGCAGTTTCAATAGATGAATACATACCACTTACACCAACACACTCTTCTTTACCAGGTTGCTCTCATTGGTCACAGCCTTTTCCAAATTCTTCACCAGAAGATTTAATGCCAATTCCAAAAAGTAATAAGACAACTAAAAGAAATTCTAGGAGACGTGGCAAGACTGCAATTCGAACTGAATCACCATATAAAAATGAACTTTTGGCTCTATCAATCAACAAAACTTCTATAACTTCAGTTAAAAGATCTATATACATTATACATTATACATCTACACATTAG
- Protein Sequence
- MVRNYIRKTDRQSWDEKSMENAIMACYNKEMGYRKAAVSFNVPQSTLERRLKKYKDTGDPGKKRLGAFKTVFNEEQENQLVNYIKAMEARLFGLTTKEIRLLAYQLAEKNQINHPFAKENDQAGLDWMYNFMKRHPDLSIRKPEATSAARASGFNPTAVGKFYTLLSGIIDTHKLQASQIYNVDETGITCVPKTQSKVVACRGRRQVGALTSAERGQTVTVEICMCADGSFMPPMLIFPRVRSKPELIDGAPPGSWAEVHPSGWIQSDLFLKWFEKFIVFSRASNTNRVLLLLDGHATHTKNIALIDKAREAGVILLCFPPHCTHKLQPLDVAFMKPLSIYYCDEVKKWLREHASEHRVVTRYQIASLLGKAYLKAATMTTAINGFKATGIWPLDPNNFNESDFLASATTEIELENQEKDGSIEENIPHTSTSSPGYTNSNKTAVSIDEYIPLTPTHSSLPGCSHWSQPFPNSSPEDLMPIPKSNKTTKRNSRRRGKTAIRTESPYKNELLALSINKTSITSVKRSIYIIHYTSTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01031868;
- 90% Identity
- -
- 80% Identity
- -