Rpad024385.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000007968.8092:F:967:19252:F:2455-8278[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-08 7.6e-05 22.9 0.0 6 37 99 130 97 132 0.92 2 2 3.3e-05 0.039 14.2 0.0 3 41 151 189 149 192 0.88
Sequence Information
- Coding Sequence
- ATGCCAGGTGCATTTTCCTTTATGATCATCAGTTTAGAGTTTCACTTGACTCTACGCAAGGATCATCTTACTACGACATCTGCATCTCACTTGTTCAAGACGTTCACTGCCTTCGCTAGCCATTACAAGCCGGCCGTTCCTGCCTTCAGACCGCCGTACAAGCCGGCCGTCTACATACAGAATCCACACCGCTATGAATTAGGAATAATAGTAACAAATAAAATTCAAAAATTCAAATTACTATTTAAAAATATAATAAAGTCTCTTATTTTCCAGATGTCGGACATTCCATTATTGAATGCTGTGGAAGCTGTTAAAGCCGGATCACTGTCTGCCGGACAGGCTGCCAGGGAGTTCAAAGTCCCGGAAACGACCCTGAGGGCGCACCTCACCAAACTAGGGATCGTTGCGGCCGTTGCGAGCAGAGGATATACGAAAATATCCGAAAACCAAAATTTGGCTGCCGCGGTTAATCTGGTCTTGATAGATGGCTGTAAGGTAAACGAAGCGTCCAGAAAAGCAAACGTGCCAAGGTCGACGTTAAGAAAGGCGTTAAAAGACCATGAAAAGATCAAAGGAATACTGCCACCGGCAGCGCCATTAGCATCTGGCCCTACTGTGGGGGACGTCTTAGCGCCATTAGCGTCTAGACCGACTGTGGGGGACGACTTAGCGCCATTAGCGTCTAGCCCGACTGTGGGGGACGTCTTAGCGATCGTTGAAGACGACGAACGGCCTGTGGAGGACGTCGCACCGAAGACCGTCATGAAAGACGTCATTGTTTTTAAAAATGGCCGTGCCAGGACCGATCAACGAGAAGTGGTGGTACACACACGTTCGGCATACAGCGTGCCTCCAATCGGAATTGTGTACCCAATTCGGACACCAGCCAGCTCCTCTGTCGACACTCCGTCTCCGCCTAGCAAAGTTTCGCCACTTCGTGCGACCAGCGATCCGCCCGTCAACACTCACATTGTATTTGCCGAATCGTCTTCGGACGACGAACCGGAGCTGCGATTCTCGCCGGTGGACGACGATGTCCTGCAGGTCAAGTCGCCACTGGCAGTGGACGACATTTTCACTCCGTCACCCCATCCGACGAAACCCGAAGACGTTTACCAGTTTAACGGGAGCGACGATGAACTCGAGCCAGCACCACTCAGGAGTAGGACCGATGCACCGGCGGCACCAGCTGCGGAAAGGTCGGTCTCACCGATATCCACGGGCCCGATCGCGTCGGGAAACTCGCAAGAGCAAGACGAGGAAGACGACGACGAGCGTTTACTGCGGCCCAAGCGGCTCACCGTCGTCGAAAAACTCGCCAGTTCGACCGACACCCAGCTCGTGAAATACTGCCCGATGTGTGAGTTTATGACTTGCGGTCACAAACTCGGCCGGCACATCGAAAACAAACATTGGGACCAGATGACAAAGCCGCGGAAAGAGAACATCAAAAAGATTTGCGACTACATTGCGAACGAATCGCGAAAGTCATATTCTGTTGTGCCCACGAGGGCCGTGAAAAAGAAAGTAGGTCCCTACTGGGACGACCGGTGCTACAGGGAAATCGTCCACGGTCTCACACTCATGGGAAGAATGAAATGTTACGGCGAGTCCTGGAACCTCCCGGGTGTCAAAGACATGCCGAATCCTTTCGCCGGTCTCTTCAGGCCGGCGGGAGATGACGCCATCTCTGGACCCGCGCCGCTCCCAGAACTCCCCACGACAAGCGCGCCCCCGGTGCGCTATGTACAGGGTCCGTCGCGGCCAGTGGGTAAGCCGACACCGACACCAAAATCGACAACGACACCGACATCGACATCGCCGCGGCGTCCGACCGGCGCACAGCCCGGCAAACAGTCGAACTTGCGCAAGGCGGCATCCAGCAAGGGGCTGAACCATCAGCTGCCCGTCGACCACCCGTTGATAGCCATGCTCGAGCGTACGCTGGCCTACAGCCACGGGGTGGACTCAGCGGCGGCTAAAAATTATGTAGCCAACGTTACAAGAACATTGACGTACGTGCAGAGGCGTTTGGTGGAGAACAAAACTCCTCCCGAACACTGGTCGGCGTTGGTCACCGTCGACGTCGATATCTACATTGAATACTTTAGACTACGCGAGGAGATCGGGCAAACGAAGGCGACAACGATCAATTATTTGAAAAATTTGCGAATGCTTTTCCACAACATTATGAATTCGTACGTTCAAGAGGACCCCGCCTTCCCTAAGGATTTTGATTTGTCGCCCTGCGTTAAGACGGTCACGGCCATTAAGTTGTTGGACCACAAGCTGGGACTCGTCTACAAAAGGACTACGAAGCAACAGCCAGGAGAGTTGTTTACGAGGAAGACGAGAGAGGCCGAAACCCTGCCCGAGTTCGAAGCTGTCGTCGAGTCATTGCGCAAAATCAAGGGCACGATCCACGGAAATTTGAGGTTGCTGGAAGACAGGTTCGGGAACTCGGGCACGGTGAACGTCCGGAGCGAGAAAAATAGTCCGCCGGCGGAGAAGGAGCTCTCAAAACTGTGGCGACAGGCTACCTGTGCCCTAGTAATCGAGCTTCTGTGGACCTCCAAACAACGGAGCGGGGTCGCCGTCGGGATGACCATCGGCGAGTGGGAGTGCCGTCGGACAATGGACACCAGGTCCATAATCACCGTAGCCGAGCACAAGACCGGAGACAAGGAGCCCGCCACGCTCGTCCTCCAAGAGGGCATGGGTGAACTGATGGAGAGATATTATCGATTAAGGCTAAGGCTCGGATACGGAAGGCCCAACTTTTTCGTCACGAACCGGGGTGAAAAAGTCGTAAAGATTTACGACGACGTCAATAAAACATTTGGCGCCCGTCTTTCGGCGACTCTGTTCCGGCGCATGGTCGAGACAGAGGGCCGGGACCACGACGCTGCGACGTCTTCGGGGGTGGCGAAGGCGTTGCAGCACTCCGAGGATACCGCCAGCCGCTACTACCGTGTGCCGGACGCGGCGGAGGCGATTCGACGCCAGGGCAACTTGGACCGGGTGGAGCACACGGCTTTACTAAAGAGCTACGTCGATAAACACTTCGAGGACTTTTTCCCACTTATTGCACACTCTCCGTTCCCGAAAACGGAGACGGCGATCGACAAGATAAAGGAAAGCGACATAATGATCGATTATCCGTCGGCGGCCATCGATATGGACTACATAATCAAACTACAAGACCGCTATGACGCCACCCTTCTGGCCGAAAGGGTGGACGTTCTAGCAGAGTTGGTGAAGCTCGCCGGTTTCGACCGCGCGAACGTCTCGGACTACGCCATAATAGACGTCACCAAGAAGAAGAAGGACGGGGACAATGCATTATGTAGTAGCCGACTCGAGTGCCCGGTGGACTTCGCCGAGGAGGATCAAGCTCAAAAAGATTTTATCCCCGGGGTACTCCCGGTGGACTTCGCCGAGGAGGATCAAGCTCAACAAGATTTTTCTCCCCGGGCGTCTCACCGAAGACCGACCGGGGTACCGTCGGTCCGAGGGAATGCCTCCCACCGGCAGGCCTCCCGCGACGGTCTGTACCTAGGGAAATCGCGGGTTGACGGCCGGTATCGAACTCACGTCGACTGGGTCTTCGGGCTTGACTTCCCCTCGTCCGGCTCCTTCGCGTATCGGACGGCGGGTCCGAACGCACGGCCGAGCCCGAAGACCCCGTCGACGTGGATCCAATGCCGGCCGTCAATCCGTGAATTCCCCCGGAACAGACCGTCGCGGGCGGTCTGCCGGCGGTCGGCGTTCCCCCGGACCGTCGAGACGCCGGTGCCCGACGAAATCGTGTTGTTTACGTCGCGTCAAGTCGACCGTTCCTCGCGGTCATGGGCGGGGCTTGGTCAAGTCGAGAACGAAAAACGCTTCGATCCGACTTCCCGTGCATTTTAG
- Protein Sequence
- MPGAFSFMIISLEFHLTLRKDHLTTTSASHLFKTFTAFASHYKPAVPAFRPPYKPAVYIQNPHRYELGIIVTNKIQKFKLLFKNIIKSLIFQMSDIPLLNAVEAVKAGSLSAGQAAREFKVPETTLRAHLTKLGIVAAVASRGYTKISENQNLAAAVNLVLIDGCKVNEASRKANVPRSTLRKALKDHEKIKGILPPAAPLASGPTVGDVLAPLASRPTVGDDLAPLASSPTVGDVLAIVEDDERPVEDVAPKTVMKDVIVFKNGRARTDQREVVVHTRSAYSVPPIGIVYPIRTPASSSVDTPSPPSKVSPLRATSDPPVNTHIVFAESSSDDEPELRFSPVDDDVLQVKSPLAVDDIFTPSPHPTKPEDVYQFNGSDDELEPAPLRSRTDAPAAPAAERSVSPISTGPIASGNSQEQDEEDDDERLLRPKRLTVVEKLASSTDTQLVKYCPMCEFMTCGHKLGRHIENKHWDQMTKPRKENIKKICDYIANESRKSYSVVPTRAVKKKVGPYWDDRCYREIVHGLTLMGRMKCYGESWNLPGVKDMPNPFAGLFRPAGDDAISGPAPLPELPTTSAPPVRYVQGPSRPVGKPTPTPKSTTTPTSTSPRRPTGAQPGKQSNLRKAASSKGLNHQLPVDHPLIAMLERTLAYSHGVDSAAAKNYVANVTRTLTYVQRRLVENKTPPEHWSALVTVDVDIYIEYFRLREEIGQTKATTINYLKNLRMLFHNIMNSYVQEDPAFPKDFDLSPCVKTVTAIKLLDHKLGLVYKRTTKQQPGELFTRKTREAETLPEFEAVVESLRKIKGTIHGNLRLLEDRFGNSGTVNVRSEKNSPPAEKELSKLWRQATCALVIELLWTSKQRSGVAVGMTIGEWECRRTMDTRSIITVAEHKTGDKEPATLVLQEGMGELMERYYRLRLRLGYGRPNFFVTNRGEKVVKIYDDVNKTFGARLSATLFRRMVETEGRDHDAATSSGVAKALQHSEDTASRYYRVPDAAEAIRRQGNLDRVEHTALLKSYVDKHFEDFFPLIAHSPFPKTETAIDKIKESDIMIDYPSAAIDMDYIIKLQDRYDATLLAERVDVLAELVKLAGFDRANVSDYAIIDVTKKKKDGDNALCSSRLECPVDFAEEDQAQKDFIPGVLPVDFAEEDQAQQDFSPRASHRRPTGVPSVRGNASHRQASRDGLYLGKSRVDGRYRTHVDWVFGLDFPSSGSFAYRTAGPNARPSPKTPSTWIQCRPSIREFPRNRPSRAVCRRSAFPRTVETPVPDEIVLFTSRQVDRSSRSWAGLGQVENEKRFDPTSRAF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -