Rpad013112.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- bab1
- Assembly
- None
- Location
- scf7180000007808.1449560:1097774-1139501[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-15 4.8e-12 45.9 0.0 1 41 563 604 563 607 0.94 2 2 2.4 2.9e+03 -1.4 0.3 6 15 693 702 689 718 0.84
Sequence Information
- Coding Sequence
- ATGAAAATAAAAATAAATATTAATAACGGAGCTGTGGAACGCGGACGGTGTTTTTTTAATTTATTTTTATGTGGTACGGCGTGCAGAAAAGTCGACACACGGCGGTACAGTAATTTCGTCCTGCGGTCTCTGGTCACACTGCGGCCGTGGCACAGGCACCCGCCGCGGCCGGCGTTTTCGTCAGCGCGCGCCACCGCCGCCGCCAAACAGCCAGCCGCCCGCCTACCAGCCTGCCAAACGCGGCACCCGACGCGACTACAGTCAGTTCCGCCGCGACCGGTGCTCTCGTCCGTCACGCGCGCGCCGCTTTCGTCTGTCGTATTCGCGTTGATAAAAAAACGTGTGCTCAGAGGTGATCGAACGTTGTTATTTAAATATTTTTTTCGTTTCGCACCCGTTACGGACGTTATCCGTAAGTTCGCGATTTTTGTCAATTTCGCGCCGAAATTTTTTTTCTCGACAGTCCGTCCGAGTAGTCACGCACTGCACAACCAGCAGCATCCAACCGCCTCCGCCACCATGCAACCGAGCAACGGCTCCAAAGACGTGCCGTCGGCGGCGGCCGAGAAGACTTGCGGCGCGACAGGCGGTTCCGGCAACCAGCAGTTCTGCTTGCGTTGGAACAACTACCAGAGCAACCTGACCAACGTGTTCGACCAACTGCTGCAGAACGGCACGTTCGTGGACGTGACGATCGCCTGTGACGGTCATACACTCAAAGCGCACAAGATCGTGCTGTCCGCATGCAGCCCATACTTCCAGAGCATGCTGGCCGAGAATAAGTGCAAGCACCCGATCGTCATATTGAAAGACGTCCAGTGGCCCGAACTTAGGGCAGTCGTCGACTTCATGTACAAGGGCGAGATAAACGTTTATCAGGAACAGATTGGCCCGCTGTTGCGCGTCGCCGAGACACTGAAAGTCCGCGGTTTGGCCGACGTCAGCAACGAACAACTCACCGGCGGTGGTGGATGTGAACCACAAGCCGCGGCCACTGTGGTGACGCCCACGACTGTAGCACCCGAATCTCCCAAACAGCCAGCCCGGAAGCGGCACAGGCTGTCACCACCGGCGGCTAGCCCAGAGTCTGTCATATCCGACATGGGATCGTCGGTCGCGGACACGCCGCTCAACTTGCACCACATGCCACCACCTCCAGCCCCCCATCATCAGCAGCAGGCGCAGTCGCAACTATCGCACGTGCACCACCAACAACAGCAGCAACAACAACAACAACAACAACAACAACAACAACAACAGCAGCAACAACAACAACAACAACAACAACAACATCAGCAGCAGCAGCAACAGCAGCAACAACACCAACAACAACAGCAGCAACAGCAGCAGCAGCAGCAGTCGTCACAACAGCCACCGGCACCACAGGCCATGCCGCCGTCCGCCTCGTCCGCTTCATCGTCGTCGTCGTCATCGTCATCGATACCACCGCCGAGCAGCGTGGCCGACGATATGGAGATAAAGCCGGGCATCGCCGAGATGATACGCGAGGAAGAAAGAGCCAAAATGTTTGAAAGTTCTCAGGCCTGGCTCGCATCCACGTCTTCGCCAATGACTTCCGACAGTTACCAGTACCAGCTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAACCTGCGGTTCAGAGAGCGCGGTCCGCTCAAGTCGTGGAGACCAGAAACGATGGCCGAGGCTATTCTGTCCGTGCTCAAGGAGGGCCTTTCGCTGTCGCAGGCAGCCCGCAAGTACGACATACCGTATCCGACGTTCGTGCTGTACGCCAACCGGGTGCACAACTTGCTCGGTCCATCCGCAGACGGCGGCGCAGACTTAAGGCCTAAAGGCAGAGGACGTCCTCAAAGGATATTGTTAGGATTTTGGCCAGAAGATCACATTCAAAATGTAATCAGGACTGTTGTGTTTAGAGACGCACAAAACATCAAAGAAGAAGCATTACACCTTTACCCAAGAATACCGTGTTTATCCGACCCAATGTCTGGTGGTCACTATGGTAACAACGCGGTTCAGTCGGTTGAAGGTCCCGTGTCGCCAAACTCTGCCGCGGCCGCTGTGGCTGCTGTCGCGCAGGGTATACGGCAGCAAATGATGGCCGCCGCCGGACATAACATCTCTCCTTCATCGGGTGTCGACGCGTTCGCCCTACTCGCCTCTTCGCACCTACCCAGTCCGGCTGACATGTCACCCAATTCGTCTCCACCCGATTCACCGTTAGTTTCCAACAACAACGTCGAGGTGAGCCTCAGCGGTTACAAGCGATCCATCGACCACTCCAACCAAGACAACGTGTTCGTCGAAGACATTGATGAGCTCGTGAAGAACAGCCATTGTACCGGAGGCTCGTCAATGGGCAACAACATCGATCAGCAGCCGTTGCCGTTAGTCATCGAGCAACGGACTGAATAA
- Protein Sequence
- MKIKININNGAVERGRCFFNLFLCGTACRKVDTRRYSNFVLRSLVTLRPWHRHPPRPAFSSARATAAAKQPAARLPACQTRHPTRLQSVPPRPVLSSVTRAPLSSVVFALIKKRVLRGDRTLLFKYFFRFAPVTDVIRKFAIFVNFAPKFFFSTVRPSSHALHNQQHPTASATMQPSNGSKDVPSAAAEKTCGATGGSGNQQFCLRWNNYQSNLTNVFDQLLQNGTFVDVTIACDGHTLKAHKIVLSACSPYFQSMLAENKCKHPIVILKDVQWPELRAVVDFMYKGEINVYQEQIGPLLRVAETLKVRGLADVSNEQLTGGGGCEPQAAATVVTPTTVAPESPKQPARKRHRLSPPAASPESVISDMGSSVADTPLNLHHMPPPPAPHHQQQAQSQLSHVHHQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQHQQQQQQQQQQQQSSQQPPAPQAMPPSASSASSSSSSSSSIPPPSSVADDMEIKPGIAEMIREEERAKMFESSQAWLASTSSPMTSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRIPCLSDPMSGGHYGNNAVQSVEGPVSPNSAAAAVAAVAQGIRQQMMAAAGHNISPSSGVDAFALLASSHLPSPADMSPNSSPPDSPLVSNNNVEVSLSGYKRSIDHSNQDNVFVEDIDELVKNSHCTGGSSMGNNIDQQPLPLVIEQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305756;
- 90% Identity
- iTF_01305756;
- 80% Identity
- iTF_01305756;