Rpad012982.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000008168.15402:8957-13654[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-09 3e-06 27.4 0.1 5 44 1 41 1 42 0.93 2 2 3.8e-07 0.00046 20.4 0.0 3 34 54 85 52 93 0.89
Sequence Information
- Coding Sequence
- ATGGAGAAGGCACTGATGTCCCTCAAAAGTGGCAGTCATTCAATTTCTAAGGCATCACGCGAGTTTAACATTCCCGAAACTACCTTGAGGGAATATGCCGTAAGGCAAAACATTACGGTTAAAGTCACTCAACGTGGGTACGTCAAGGCTACAGAAAACAAGGCCCTCCAGGAAGCCATCGTCCTCGTAATTGAGAAGGGGATGTCAGTAAATCTCGCTAGTCGTACTATGAACGTTCCAAGGACTACTTTAAGAGTCGCGCTGGAAAAAATAGAAAAGGGCACACCGGATGGCTTGACTACGAAAAAAAATAAATATACTGTCGATGCTGCGAAATTAAATTCCGTATTGCAAGTGCCGGCCGCTCCCGCAAAAACAGAACTGGCAGCCGCTATAGTGGACCAGGTCCAAGTAACGCCCGAACCTGAACCAGAGATGGTTTCTAAACCGGAGAAAGTTCCTGAACCGGAGAAGGTTTCTGAACTGGAGACGATTCCTGAACTGGAGAAGGTTTCTGAACTGGAGACGGTTCCTGAACCGGAGAAGGTTTCTGAACCGGAGACGGTTCCTGAACCGGACACGGTGAAAAAAACGATGGTCAAAAGTAAAAAACAAAAAATTTACACCAAAACCGTGGAAGTACATGGTCGCAGCGCCTATTACCGGGAAAAGCCAAAATACGTAGAAAAACCGATGATGGATATAGAGGAGACGAGTGATGATGATGATGATGATGATGATGACCTCATAGTGACACAAAAACCGGTCGAAAACACGCACATCAGGTTCTCGTCACCAGTTCCAAAAAGAATATTGATCGTCCAACCGTCGGATATGTACAAAGAACCGTCTCCAGTCCCCGGACCGTCGGGAAGCGGCCGCAGATATGAACCAAAATTTACACGGCTCGAGTCGGACGATGCATTGATCGTTGAATCTGACGGATCGATACAGCGGGGAAGTCCGCTTCGTTTGTCCGAAATATCGGACGACGAAGACGACTATGATGAAGTGGTCGGTCGTTCCCGAAAACGTCGCCAGGATGTCTCCGACCGGGACACTTATTCTATCAGTCAACGACTCACCAAATATTGTCCGTTTTGTTCATTCCATACGGACAATAACAAAATGGGGCGGCACTTGGGATTAAAACACGAAGACAGAATAAGAAAACCGGTCAGCGCATCCCTTAAAGCGATCGGCAAAATATTTGGTTCTGAATCAAGGAGATCAATTACTCTCGTCCCAATGAGCGTCATAAAACAGCAGTTCGGCGCTTATTGGGACGACGTCAGCTACCGAAGAATCGCATTCAGACTTTGCATTATGGGACGAATGCGGGTATATGGCGGTTCTTGGGACCTCCCGGAAGCCGCAGAAATCCCAAATCCGTTTCGGAATTTTATAATCGACCGCCACCATACACCGGAGATGGCCCGAACAACGACCCCCGTGACACCGGTGGACCATACCCCCCGGACCACGACAACGGAGGATAACGATTCTCCTGCGTTGAAGAGGGTCAGGAAAGATTTAATAAACGAGGGACTCCAAATGCAGCTGCCGTCGGATTACCCGCTGCTGCAGATGCACTTGGCGTCGCTAACACTAAGTCATCACAAACATTCTTCTGCGGTGAAGAACTACATGGCGAATGTCGCGCGTATTCTGTATTATGTGCAAAACTATTTATCCACAAAGAAAAATACGCCAACCCATTGGTCCGACCTCTTGGGCTGCGGTGTCGAGCCTTTTGTTGAATATTTATCAAAACGCGAAGAGCTCGGACAAACCGTTTCAACGTCAATTAATTATCTAAAGAATCTGGGAAATCTCGTCGATATGGCAATATCGACTTATTGTTACGACGACCCGAGATTTCCCAAATCTTTTGACAATGAACCGCGGCCTGCCACTGTAAACGCCATCAAAGTTCTAAAAAAGAAACTGGACCTCCTGTACAAAAGTAAACTTAGGAAACAACCAGCGGAACTGTTTCTTAGGAAAACGGACGAAGCGGCCGCTTTACCGGAGTACGCCGTGGTGAAGAAGACACTCGACCGGGTCGAGTCCGAAGTCCCGGAGTTCTTGACTCACCTGGAATCCAACTTCGGGCCAGACGACGTGGTCCGGGTGTCTTCCGAGCCCGGCTGTACTGGAATGGAAAAAATGATGAGTACATGGTGGCGAAAGGCCTGCTGTGGGCTGGCTGTCATAGTGCTGTGGATCTCAAAACATCGAAGCGGTGTCGTGAGCGATATGACAACAGGTGAATGGTTAGCCCGCAAACGGGAGGCGGACAAAGTAGTCGTTACGGTGGCAAAACACAAGACTGGCGATAAACAGCCCGCACTTGTTGTTTTGCCGCTTAACATCGACCGACTGATGGAAAGATACTATGAACTGAGAAGGAGGATATCTACCAACAACAATAACTTTTTCATAACAAACCGGGGTAGGAGACTCGTCAAATTGTATGACGAGGTGCACAAAATATATGGTTCTCGGTTGTCGGCAAACATTTTCCGGAGAATGGTGGAGACAATGGCCCGGGCACACGATCCTCAGACTTCCAGCGGCGTAGCCAAAGCTCTTCAGCATTCCGAAGATACGGTGCTGAGATACTATCAGGTACCGGATGCCAACGAGGCGATACGGCGCCAATCTAACTTCGACACCGTGGACCAAACGGCCGTTTTTGAGGACGCCGTTCTCGACGAAATTGAAGATCTTTTCCCGGCAGAGCCCTACGCCAAAAACACCAAAACAATAGTAAGGGCGAAACTTTTGCAATCCGACGCATTCGCGGCATACCCCGCAGCCAAGGTGTCCAATGCGTTTGTCGACCGGGTTTGCAAAAACTATTGCGAGAAGGTGTGGGACGCTCGAGCCCAAATCCTCGTGGACAACTTGTTGGTTGACTACGACGCAACCAACATTAACAGGCAGGCTGTAATCGACTGTGCAAAAACGAACCACATCTATTACTTCCTGTCCTACGAAAAGGAAAAAATGATTAATAATGTGATGGGTAGGTCCTCCGATCAATCCGAAAAATGTCCGACTGATGGGGACAATGCGCCGGGGAAACGTGGGATTGATGGTGAAACACAACCGGGACGGGGACACCCTTCAGCCGCGGTCGGACATCGCCTTTACCCGAATTCCTATCTAGCGAAACCACAGCCAACCGACGATGGTCCTCGGGCGGACGGACCAGGTGCCGCGATTCGCCGGGCGCAGGGCGTTCAATCCGAAAAATGTCCGACTGATGGGGACAATGCGCCGGGGAAACGTGGGATTGATGGTGAAACACAACCGGGACGGGGACACCCTTCAGCCGCGGTCGGACATCGCCTTTACCCGAATTCCTATCTAGCGAAACCACAGCCAACCGACGATGGTCCTCGGGCGGACGGACCAGGTGCCGCGATTCGCCGGGCGCAGGGCGTTCAATCCGTAAAAATGTCCTACTGA
- Protein Sequence
- MEKALMSLKSGSHSISKASREFNIPETTLREYAVRQNITVKVTQRGYVKATENKALQEAIVLVIEKGMSVNLASRTMNVPRTTLRVALEKIEKGTPDGLTTKKNKYTVDAAKLNSVLQVPAAPAKTELAAAIVDQVQVTPEPEPEMVSKPEKVPEPEKVSELETIPELEKVSELETVPEPEKVSEPETVPEPDTVKKTMVKSKKQKIYTKTVEVHGRSAYYREKPKYVEKPMMDIEETSDDDDDDDDDLIVTQKPVENTHIRFSSPVPKRILIVQPSDMYKEPSPVPGPSGSGRRYEPKFTRLESDDALIVESDGSIQRGSPLRLSEISDDEDDYDEVVGRSRKRRQDVSDRDTYSISQRLTKYCPFCSFHTDNNKMGRHLGLKHEDRIRKPVSASLKAIGKIFGSESRRSITLVPMSVIKQQFGAYWDDVSYRRIAFRLCIMGRMRVYGGSWDLPEAAEIPNPFRNFIIDRHHTPEMARTTTPVTPVDHTPRTTTTEDNDSPALKRVRKDLINEGLQMQLPSDYPLLQMHLASLTLSHHKHSSAVKNYMANVARILYYVQNYLSTKKNTPTHWSDLLGCGVEPFVEYLSKREELGQTVSTSINYLKNLGNLVDMAISTYCYDDPRFPKSFDNEPRPATVNAIKVLKKKLDLLYKSKLRKQPAELFLRKTDEAAALPEYAVVKKTLDRVESEVPEFLTHLESNFGPDDVVRVSSEPGCTGMEKMMSTWWRKACCGLAVIVLWISKHRSGVVSDMTTGEWLARKREADKVVVTVAKHKTGDKQPALVVLPLNIDRLMERYYELRRRISTNNNNFFITNRGRRLVKLYDEVHKIYGSRLSANIFRRMVETMARAHDPQTSSGVAKALQHSEDTVLRYYQVPDANEAIRRQSNFDTVDQTAVFEDAVLDEIEDLFPAEPYAKNTKTIVRAKLLQSDAFAAYPAAKVSNAFVDRVCKNYCEKVWDARAQILVDNLLVDYDATNINRQAVIDCAKTNHIYYFLSYEKEKMINNVMGRSSDQSEKCPTDGDNAPGKRGIDGETQPGRGHPSAAVGHRLYPNSYLAKPQPTDDGPRADGPGAAIRRAQGVQSEKCPTDGDNAPGKRGIDGETQPGRGHPSAAVGHRLYPNSYLAKPQPTDDGPRADGPGAAIRRAQGVQSVKMSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -