Rnym006854.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- SIZ1
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000007.1:15005686-15006881[+]
Transcription Factor Domain
- TF Family
- zf-MIZ
- Domain
- zf-MIZ domain
- PFAM
- PF02891
- TF Group
- Zinc-Coordinating Group
- Description
- This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation [1][2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-19 3.5e-16 59.2 3.3 3 47 209 253 207 256 0.95
Sequence Information
- Coding Sequence
- ATGTCTGAACAACAATCGTCAAACCGCAAACTAATTAATCTCGATATTGTCAATTCAACATctaaatcaaaaaacaatGTAGTATTCATACCTCAgccattttacaaaaatatatgtacaattattgaaCCAGTGGTTGTTTATTGTGACTCAGAAGTTAAACCTGAATGTGGACAATCACAAGAACACActcaatttgtatttaaatttacattatcaaagttaataataaatatgataaaaaaacaaaaaaaaagattccAATTCCAGATCCGATTTGGAGAACAGCCGGtagaaaaaattgatttatcagATGGATTACCGGGGCCAACAAGCATATGTATCAATTCAAAGCATTCGTCCACAGCCAAAACGAGCCCTATGACTTATGATTGTGATTATTTAAGTGAAGAAAATGAGATCTCAATATTGTGgccattttgtaaaaaaacatattacatgGCACTAAATATTGTAGAGACCATCTCGATTGAAGAATTGATAACACgcgtaaaatttaacaatgtaatatatgctattaaactaaatacaaaAGCTAAGGCTATAGAATTAatgaaaagtttaaatacaGAAATTCTTGATTCGACGCCCTATAAGTTACTTTTATTGTGTTCAATAactgaattaaaaatgaaattacctACAAGATCTCTAAACTGTAGTCATTTACAATGTTTCGATCTGCATACGttcattttactaaataagttaaaaccGAGATGGATATGCCCGATTTGTTTCATACCCATTCCATTCCATGAATTGGCAATAGACACATTTCTTTTGGATATTATCAATGATCCAACTCTTTCTACAAATTGCTTTGGAGTAATATTTCATGCTAATGGTGAATGGGAACCATATATTTTCCAGGATATTGAAGACGAATATCCAAAAAATAACGTTGTTCTTAAGGATGTGGATAATCCCAATGATGAAAATACCAATGATGAAAATCTCCCTGatgaaaaactttatttaccAATAACAAGTAGTTTGAATCCTGTTGAACAAATGCTTGATGATTTGACCATAGACGGTACAGACATTAAAAAAGAACCATCTAATAAAATCCTTAAAACAGAAGATGCTGATGAATAA
- Protein Sequence
- MSEQQSSNRKLINLDIVNSTSKSKNNVVFIPQPFYKNICTIIEPVVVYCDSEVKPECGQSQEHTQFVFKFTLSKLIINMIKKQKKRFQFQIRFGEQPVEKIDLSDGLPGPTSICINSKHSSTAKTSPMTYDCDYLSEENEISILWPFCKKTYYMALNIVETISIEELITRVKFNNVIYAIKLNTKAKAIELMKSLNTEILDSTPYKLLLLCSITELKMKLPTRSLNCSHLQCFDLHTFILLNKLKPRWICPICFIPIPFHELAIDTFLLDIINDPTLSTNCFGVIFHANGEWEPYIFQDIEDEYPKNNVVLKDVDNPNDENTNDENLPDEKLYLPITSSLNPVEQMLDDLTIDGTDIKKEPSNKILKTEDADE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -