Rnym007385.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- SIZ1
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000007.1:24389968-24391232[+]
Transcription Factor Domain
- TF Family
- zf-MIZ
- Domain
- zf-MIZ domain
- PFAM
- PF02891
- TF Group
- Zinc-Coordinating Group
- Description
- This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation [1][2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-21 8e-18 64.4 4.0 3 49 210 256 208 257 0.96
Sequence Information
- Coding Sequence
- ATGTGTGAACCACAACCATCTAACagcaaaaaaatagttaatctTTTCATTGTGAATGCAATGCCTAGACCAAAATGCAATGTAGTATTCGAACCTCAGCCATTTTACAGAAATGTATATTCAATTCTTGAACCGGCAGCTGTTTATTGTGAATCAAGATTTAAACTTGAATATGGACAATCACAAGGACATACtccatttgaatttaaatttactttgccagttttaataaaaaatatgataaatgacaaaacaaaaaatctcCGATTGCAGATCCGATTTGGAGAACAGCTGGCAGGGAAAAGTGATTTAGCAGATGGATTACCAGGGCTAACAAAGGTATGTGTCAATTCGAAGAAGACATCTACGACAAATAATAgccctttaaattttaaatgtaaagatTTAATCGGAGAAAATAATGTCTCAGTATTGTGGCCATTTTGTAagaaaccatattatatgatgGTTAATATTGTGGAGATCGTTTCAGTTAAAGATTTGGTGGAACGCATACAATTTAACAATAGACTATGTTCTGTTAAACTAAATACAAAAGCTAAGGCCATGGAATTGATGAAAAGTCTAGATACAGAAATTCTTGATTCAACGTCCTTTAAGTTCATGTTATTGTGTCCAAtaaccaaattaaaaatgaaattaccaACAAAATCTCTGAAATGTAGTCATTTACAGTGTTTTGATCtgtatacattcattttattgaataagatAAAGCCAAAATGGATATGCCCTATTTGTAAGATATCCATTCCAATCAATGAATTGATAATAGATTCATTTCTTTTGgatattgtcaataattcAACTCTTCCAGAAAATTGCTATGAAATTACATTGTATGCGAATGGCAAATGGGAACCATATATAGAACAGAAAATGGATGGTATTGAATACAATCAAAGCGAATCTGATGATGAAAATACCATTAATCTTATGGATTTGGATGATCCCAATTATGAAAATCTTCTCAATGAAGATCACCTTGATGAAAATGAACCTGATGAAAATGACTCCGATGAAAATGACCCTGATAAAAAACCTATCTTACCTATTACAAATGATTTAATTCCTAATGAACCAATGCTTATCGATCTGACCATAGATGATACAGACATTAAAGAAGAACCGCTTACTAAAATCCTTAAAACAGAAAATGCCGATGAATAA
- Protein Sequence
- MCEPQPSNSKKIVNLFIVNAMPRPKCNVVFEPQPFYRNVYSILEPAAVYCESRFKLEYGQSQGHTPFEFKFTLPVLIKNMINDKTKNLRLQIRFGEQLAGKSDLADGLPGLTKVCVNSKKTSTTNNSPLNFKCKDLIGENNVSVLWPFCKKPYYMMVNIVEIVSVKDLVERIQFNNRLCSVKLNTKAKAMELMKSLDTEILDSTSFKFMLLCPITKLKMKLPTKSLKCSHLQCFDLYTFILLNKIKPKWICPICKISIPINELIIDSFLLDIVNNSTLPENCYEITLYANGKWEPYIEQKMDGIEYNQSESDDENTINLMDLDDPNYENLLNEDHLDENEPDENDSDENDPDKKPILPITNDLIPNEPMLIDLTIDDTDIKEEPLTKILKTENADE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -