Rnym013488.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- PIAS1
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000016.1:8170294-8172281[+]
Transcription Factor Domain
- TF Family
- zf-MIZ
- Domain
- zf-MIZ domain
- PFAM
- PF02891
- TF Group
- Zinc-Coordinating Group
- Description
- This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation [1][2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.3e-24 2.1e-20 72.7 3.9 2 50 423 471 422 471 0.97
Sequence Information
- Coding Sequence
- atgaataatttaaataattattcatcttCTGATGAAGGTTATAGAAATATGCTGAATAGTTTTCGGACTAATGATTTGCAAGCATTATTGGGAGCTTTTGGTCGAAATAAAGCAGGTCGAAAATCCGAATTAAAAGATCGGGCAATTGATTTGTTAAGATCTAGGCCAGCTAATATGAATTATGCAGCATatatagcaaaaatatatgaaatatatcgtTCTATGCAAAATGATATGcctaataatgatattatgatgCGCAGTTTATTGCAAAATCAACAACAAAGGCAGATGATATCTATGGGTCAGATGCAAAACCCACAACAAAGAATGTACCAACCACCACAATATCCGCAACAATCAATGCATATGACGGCACGTGCTGGATTACCTCAAGTTATGCCCCAAATGCAAAGAGGCATATATGGTAACCACATTGGAGCAAATTCTATTCCTGGAAACACTATGGCTAATAATAACATTCAGTATATATCTGGCAGTTATCAGCCATCTGGACCTCGTACTATAGTATCATCCCAATTACCCCCAAATCATCAAATGAATATTGTGGTATCGCAAGATGCATTGGGATTTGATGCGAAAACATCGACTAGTGGAAACAATTCTTACGCCCCATCTCTTGAAACTGTAGCTCAAATCAAGTTCAAAAAGTTACCATTTTATGATGTTATTGATGAAGTCATTAAGCCAACTCTTCTCACTGGCTTGGACAGATGTACATTACAAAACGTTCCTAGAGgtATGAAAGAAGCTACATTCAAACTTGTTCTATCAGTTGAACATGCCAATTTCGTTGCCATGAATCGTGATATTTCCCatggaaaaaatgaatatgtttATCAATTCCAGATTCGAATTTGTCAGTTGATAGAGCCTGTGTCTAATGAGTCAACAGATTATATGCCTCTTGGATTACATATAAGACTTGGTATGAAAGTATGTCCATTACCACCTACTGCTCCTAATACTCGACCAGGAACTGAATCTAGAAGAACTGCAAGACCTATCAATTGCACTCAACTTGTCAAACTTTCTCCAATCGTTAGCAACACAATAACTGTAAATTGGACACCAGAtggaaaaaattatgttatggcaatgtatcttgtaaaaaaattaacagcagatactttaataaaaaaacttcaaGATAAAGGAGGAAGAAGTTCAGAAGAgaccaaaaattatataattaaaaagttagcAGATGTTGACCCAGATTTGGCTACCACATCTTATCGTTTTTCTTTAGTGTGTCCATTAGGCAAAATGAGAATGAAAATACCAGCTAAGTCTATTCATTGTGATCATTTACAATGTTTTGATGctagtacatttattttaatgaatgagAAAAAGCCAACTTGGATGTGCCCAACTTGCAATAAGCCTTGTTTGTATGACGATAtacaaatagaaaattattttttggaagTTGTTTCAAGTCCAACTCTCAAATACTGCAGCAAAGAAATAGAAATTTTGGCTGATGGCACATGGATAGTTTATGAAGAAAATAAAGAAACCAAAAACACCAATAGTACTCCTGATACTAAAGTAAAACCTATAGATTCTGTGGATTTAgatagtgacgatgaaaaatGCATTGAGCCAAAAACAGAACCTAGCCCCGAAAGTTCCAAAACCCAAGAATCTGAAAACTTAAAGTCATCTTTTATCGATTTGACATTAAGTGACGATGAAGAACCTCCAaaagaaaaagataaacagGAAAATGAAGCCCAAGCAGCTGATGCTATACAGCCAGTCGCTGTAGTTGATTTGAAACCACAAGCTCAAGTACAGCCACAACAAGCTGTTACCAGTTCTGAACAAGGAGTAGTAATAGAAATAGACAGTCCATCCCCTCCTTCAAGTCCTACCCCTACGACTGAAGCttcctaa
- Protein Sequence
- MNNLNNYSSSDEGYRNMLNSFRTNDLQALLGAFGRNKAGRKSELKDRAIDLLRSRPANMNYAAYIAKIYEIYRSMQNDMPNNDIMMRSLLQNQQQRQMISMGQMQNPQQRMYQPPQYPQQSMHMTARAGLPQVMPQMQRGIYGNHIGANSIPGNTMANNNIQYISGSYQPSGPRTIVSSQLPPNHQMNIVVSQDALGFDAKTSTSGNNSYAPSLETVAQIKFKKLPFYDVIDEVIKPTLLTGLDRCTLQNVPRGMKEATFKLVLSVEHANFVAMNRDISHGKNEYVYQFQIRICQLIEPVSNESTDYMPLGLHIRLGMKVCPLPPTAPNTRPGTESRRTARPINCTQLVKLSPIVSNTITVNWTPDGKNYVMAMYLVKKLTADTLIKKLQDKGGRSSEETKNYIIKKLADVDPDLATTSYRFSLVCPLGKMRMKIPAKSIHCDHLQCFDASTFILMNEKKPTWMCPTCNKPCLYDDIQIENYFLEVVSSPTLKYCSKEIEILADGTWIVYEENKETKNTNSTPDTKVKPIDSVDLDSDDEKCIEPKTEPSPESSKTQESENLKSSFIDLTLSDDEEPPKEKDKQENEAQAADAIQPVAVVDLKPQAQVQPQQAVTSSEQGVVIEIDSPSPPSSPTPTTEAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019863;
- 90% Identity
- iTF_01329455;
- 80% Identity
- -