Rnym017662.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- GATA4
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000024.1:2137779-2144615[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-18 8.2e-15 54.6 2.2 1 34 187 219 187 221 0.97 2 2 3.2e-19 1e-15 57.5 3.2 1 36 306 340 306 340 0.98
Sequence Information
- Coding Sequence
- ATGTACCAAAGAAGTAACGGTGGCGGCGGCTTGCAGTATTCGACTTCTCTGCCACATTACTTCACGTCCTCGCCCGAGCTCAACCAACAGCAGGCCAACAACATCATCACATCCGTGGCCGGAAATCAAATGTGGTCTACAGTAGTGTCCGAAGATGGGACCGGAGGATATTCTCCGTCATCGACAAGCAAACAGCAGCAGTCCAACCACAATGGCGGTGGTCTGCCAGCTTTCGCCCAGCGTTTCAGTACACATACATCGTCAGCGTCTGCATACACAGCTTCCGGTTCATCCCGGTCAGTTCCGTCATCATACCACTCAATCGCCACGCCCGGCGTGACGCCGTACCATCTGACCGCCGCAGCCGTCAACAACGGTGGCCCAGGGGACACCTCGTCGCTCCAGTGGGCCACGGCCGCCGCAGGTTACGCGAACACCGATGGCACCATAAACTACGCTCCAATGCAAATCAACAATCGGAGTCGGCCAAATGCGTTCTCGGCCGCCGCTTCGTTGTCAGCtctcgaCGAGATGGAAGTATTTTGCGAGGGTCGCGAGTGCGTGAATTGCGGAGCGGTTTCCACACCATTGTGGAGGCGCGACGGCACCGGCCATTACTTGTGCAACGCGTGTGGACTTTACTACAAGATGAACGGCATAAACAGACCCTTAGTGAAACAACCCAAATGGCTGGTTAGtgattataaaaagaaaatcctTTGCAGCTTATACACGCACCTACATATACGATTTGCATTGGCTTCCGCCCCGAGCTCGTCCGGTTCTGGGGATTTCTATAAGGGTCCTCTGTATCATCATGTACCCGCCAGTTTTGCAAGATCATCTGGAGCCAGCGGATTAGAAGAGAAAACCACGAGAAGAATGcAAAACGCATCTAGACGTCAAGGATTACAGTGTACAAATTGCCAAACGGCCACCACATCATTATGGCGCAGAAATCAAGTGGGTGAGCCTGTGTGTAACGCATGCGGTTTGTACTTTAAGTTACACGGCGTTAAGAGACCGCTTACAATGAAAAAGGACTCTATCCagacaCGAAAGCGCAAGCCTAAAGGTGGATCTAAAATAGAACCAGAACCTAAGAGAATCAAACAAGAAATACcgTCTGAACATAACTATAGCGACTGTCATCGTACATCCGGCAGTGTTTTGAATCATGGCAGTGCCAGTTCAGGTCTTGCATATACCAACTTGTATCAAACAGCCACACATATAACACCCGCATACTATGATGTCATCAAGTCAGAGTCATCCCAAGAGTCTATCAACAGTCCACATATAGTAAGCCTAGCATCTgccaacaacaacaataacaacaacaacaacaataataacataaacagCGGCAACAAAGATAGGCCTAGTGTTCTAACCATGTCAgttaattcctaa
- Protein Sequence
- MYQRSNGGGGLQYSTSLPHYFTSSPELNQQQANNIITSVAGNQMWSTVVSEDGTGGYSPSSTSKQQQSNHNGGGLPAFAQRFSTHTSSASAYTASGSSRSVPSSYHSIATPGVTPYHLTAAAVNNGGPGDTSSLQWATAAAGYANTDGTINYAPMQINNRSRPNAFSAAASLSALDEMEVFCEGRECVNCGAVSTPLWRRDGTGHYLCNACGLYYKMNGINRPLVKQPKWLVSDYKKKILCSLYTHLHIRFALASAPSSSGSGDFYKGPLYHHVPASFARSSGASGLEEKTTRRMQNASRRQGLQCTNCQTATTSLWRRNQVGEPVCNACGLYFKLHGVKRPLTMKKDSIQTRKRKPKGGSKIEPEPKRIKQEIPSEHNYSDCHRTSGSVLNHGSASSGLAYTNLYQTATHITPAYYDVIKSESSQESINSPHIVSLASANNNNNNNNNNNNINSGNKDRPSVLTMSVNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136479;
- 90% Identity
- -
- 80% Identity
- -