Rnym014904.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- ush
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000017.1:3997642-4008899[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.024 2.9 9.0 0.1 1 20 139 158 139 160 0.92 2 8 1.8e-05 0.0022 18.8 2.5 1 23 212 234 212 234 0.99 3 8 0.037 4.5 8.4 1.2 2 20 259 277 259 279 0.93 4 8 0.23 27 5.9 3.2 2 21 678 697 677 698 0.94 5 8 0.00025 0.031 15.2 0.7 1 20 752 771 752 773 0.95 6 8 0.0011 0.14 13.2 0.1 2 23 822 843 821 843 0.95 7 8 0.00062 0.075 14.0 0.6 1 23 849 871 849 871 0.98 8 8 0.051 6.1 8.0 0.4 2 21 1027 1046 1026 1047 0.92
Sequence Information
- Coding Sequence
- ATGCCTGTACCACAGGctGGCGAAGATAGCGAATGGACCACAAATGATGAAGTGGTTGGCGGTAGCGATGCGACAGCAAAATGTGAGGTGAAGACAGAACAGCAACAACCGTCGCCGTCATCGCGACCTGAACCGGAAGACCCACCACCCGCCAATAACACGCACCCAACGTTAAGACTTAATCCGAATTTAGCCACTGACCCAGCCAGATGGTCGCTCGCAGACAAGCCGTCACCGCCACAGCCTCCACTGCCACCACCGCCGCCACCCTCAGCAACAGTAACGGCGACTGCAGCCGCGTCATCTTCGTCTTCGTCGTCTTCGTCGTCTTCGTCGTCTTCACTGTCATCGTCGGCGATCGGCGAGCCTACTCACAACGTAGTCACTATTACCGCACCTAGAGCAATTCAAATATTCATTTGCAGCCCGTGCGGGATACGATTCAGTTCGCTGAGCACGCTGGACGCACATCAAACGTACTATTGTTCACGCAGACACAAAAAAGATTCGGAATCGGACGATGTCAAGTTGCCGATTGTTATCGAGTCGGACGAGATTGCCCTAGGCAACGACACGGATAGCCGTCCGTCGTCTGTCGAACCGAACTCAAAATCGATGAGAACGGGAAAACAGTACAAGTGCCCTCACTGTTCATACAGCGCCGATAAAAAAGTAAGTCTAAACAGACACATGCGTATGCATTCCATATCGCCGGTGTTGGTGCAATCGCCGCCGTGTCCGTCGGACAATACTGACCCATCAGTGGTGGACCGATACTGCCAAAACTGTGACATCAGATTCTCTAATTTGCGTACGTACCAAGCGCATAAGACGCACTACTGCAACACGCGGCACGTGGTAAAGCCAACCCCGTCCAGCTCGCCTATGCCTAACAACCCATCGCCCACCGGCGTGGTGCCCACTTACCTGGCACTGCCCACCAATCCTGTCATCGTAGTTCCTTACACACTCGTACAAAATGCAAGCGTCCTGTCCGCACTATCAGCGGAGATAGGCCCGTCCCCGCCTACCGATACTGCTTGCATCGTCTTGTCCGACGGCACACTTCAGCCCATCGCCCAGGCACTGGTGCCCACCAAATTCAATATGATCGCCAACAGCGACAACATACAGAGAGACCACTCGCAGTCTCCACCGGAAGAATATTTTTCGCCGCCCAAAAAAGCAGAGTCCATCAGCCCAGAGACGAAAATGAGACCGGCGGCGCAACCGTCGTCGCCGCTTGACTTACGACTGAAGCGCGTGGCAAAGTCGTCGTCGCAGGACGCCGCTGGCTGCACGGACGGCGAAGAGGAAAAGGAAAACAGACGGAGTGACGGTAACATAACGGACGCCGAGGACATAGTGTGCGCGCCGTCCATTCCGTGCATGATACTGTCGCCGTCGTCTTCTCCGACGTCCGGTGGTGGCGACGGTGGTGGTAACAAGACGCCACAACACCGGTCCGGAGTGCACCACCACCACAATCAGCAACTCCAACAGCACCACCAccagcaacaacaacaacaacaacagcaacagcaacagcaacagctgCAACAACAGCACCACCATCGCAACCACAACCCGCTGCCGCTGCAACCACCGACTAACGGAATGGCGCAACTTTCCGGCAAGCCCATTCCCGTAACGGCTGTGTACGACGGCGCCGACCGAAACGGTGGAAAGTTCAGTGTGTCTAGCCTGTTGCACGCGTCGAGTGGTCGGCTGCAGGACGGTGTCAAACAGGAACCGGTCAACAACGGTGAGCCGCCGCATCACGTGATGCACCAAATGCCGGCTGCGCATCACAGGTTCAGCGCGATGCACAAATCACTATTGTCCTCGACCGTTGTGGCCCCAATGCCACCCGGCGTTCAGCCACGTGGCCTTGGCGAACTCCTGAGCACGGCCCCTGTGTTGCCATACTTCACACCCGACATGACGCTCCGACTAACTTCGAATTCAACACAGGACGGCGGCGGCATGCCGCCCGCGCACCATCAGTTCTACTTGAAACAGGGCCCGTCCAAGTGCGAGAGCTGCAACATCGTGTTCTGCAAGTACGAGAATTTTCTGGCGCACAAAAAACACTACTGCGCGTCCCGCCCACCACCGGATGGCGGGGACGGCGACGCGGACAAGACGAGCCCAGAAGGATCGCCCGGGCCAAAGCCGCTGACGGTGTCATCACCGCAGTCGTCCAAGGACAGCGTAAGCCCCACGCCGGTGCTCAAGCCACCCATGATCCAGTTCATATGCTCCACGTGTGGCGTCAAATTCTCATCGTTCGATAACCTCACCACGCACCAGACTTTTTACTGCCCGAACAGGACTGCCGTGGCGCTGCAGGAACCGGTTGACAATAAGGCAGCGCTTCTTGCACCGCCGTTAAAATGTCCAAAATGCAAAATGACCATTGACGGGACACACCATCACCAGTGTCAACCAGCCAACTGTTGGAAGTGTCCGGTGTGCGGTGCTGTGTGCTCGAGTGCGTCGGCCGCCCAAAAACACTTGGATAACCATAACGGTATAAAGGCGTTCGTATGCACTATTTGTCAGTACAAGGGCAACACACTCAGGGGTCTCAGAACGCATATTCGCATGCACTTTAACAAGCGTATGATTCCGGATCTCATGGAAGAAGATTACGTGACGTGTCTGATCGACGAGAACTCTGCGTCATCGACGGTTGACGGACGTGCCAAAACGCCGACGACTTCAGATTCTGCGGACAAGCCGTCTGTACCGTCGACCGCCCTTGTAAAGACTACCACCGCCACCTCATCATTGTCTTCATCGTCGCCGTCGCCTTCGTCGTCTTTGTCGTCCACTGCCGCGGCCGCCATCGTCGTCGTGGACGACGAGCCAAAAGAACTGGTCGTCGTCAAGCAGGAATCGGTCAACGGCATGGCTACGCCGTTAGCGGACGAGTCGGCCACTGGCGGCTACCGTCAACAGCGCGAACAGTCGGCCACTGCGTCCGACGACCCGGTACAGCAACAACTGCCGCCGCCGCAGCCACAACTCCAACTGCAAAACGCCGGCAACAGGCGGCCCGGCATCACCGCAAAATACTGCAAGGCGTGCGACATTTCGTTTAACTATCTGTCCACGTTCATCGCGCACAAAAAGTACTACTGCCGGAACAGCACCGAGTACAAGTGCAACACGGAAAACGCCAAGACGGCGACCGTCACTTAG
- Protein Sequence
- MPVPQAGEDSEWTTNDEVVGGSDATAKCEVKTEQQQPSPSSRPEPEDPPPANNTHPTLRLNPNLATDPARWSLADKPSPPQPPLPPPPPPSATVTATAAASSSSSSSSSSSSSSLSSSAIGEPTHNVVTITAPRAIQIFICSPCGIRFSSLSTLDAHQTYYCSRRHKKDSESDDVKLPIVIESDEIALGNDTDSRPSSVEPNSKSMRTGKQYKCPHCSYSADKKVSLNRHMRMHSISPVLVQSPPCPSDNTDPSVVDRYCQNCDIRFSNLRTYQAHKTHYCNTRHVVKPTPSSSPMPNNPSPTGVVPTYLALPTNPVIVVPYTLVQNASVLSALSAEIGPSPPTDTACIVLSDGTLQPIAQALVPTKFNMIANSDNIQRDHSQSPPEEYFSPPKKAESISPETKMRPAAQPSSPLDLRLKRVAKSSSQDAAGCTDGEEEKENRRSDGNITDAEDIVCAPSIPCMILSPSSSPTSGGGDGGGNKTPQHRSGVHHHHNQQLQQHHHQQQQQQQQQQQQQQLQQQHHHRNHNPLPLQPPTNGMAQLSGKPIPVTAVYDGADRNGGKFSVSSLLHASSGRLQDGVKQEPVNNGEPPHHVMHQMPAAHHRFSAMHKSLLSSTVVAPMPPGVQPRGLGELLSTAPVLPYFTPDMTLRLTSNSTQDGGGMPPAHHQFYLKQGPSKCESCNIVFCKYENFLAHKKHYCASRPPPDGGDGDADKTSPEGSPGPKPLTVSSPQSSKDSVSPTPVLKPPMIQFICSTCGVKFSSFDNLTTHQTFYCPNRTAVALQEPVDNKAALLAPPLKCPKCKMTIDGTHHHQCQPANCWKCPVCGAVCSSASAAQKHLDNHNGIKAFVCTICQYKGNTLRGLRTHIRMHFNKRMIPDLMEEDYVTCLIDENSASSTVDGRAKTPTTSDSADKPSVPSTALVKTTTATSSLSSSSPSPSSSLSSTAAAAIVVVDDEPKELVVVKQESVNGMATPLADESATGGYRQQREQSATASDDPVQQQLPPPQPQLQLQNAGNRRPGITAKYCKACDISFNYLSTFIAHKKYYCRNSTEYKCNTENAKTATVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01168011;
- 90% Identity
- iTF_01329339;
- 80% Identity
- -