Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: PRDM1
Assembly: GCA_036289425.1
Location: JAZAQC010000021.1:1488153-1498874[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.6e-07 1.9e-05 25.3 1.0 1 23 707 729 707 729 0.99

2 5 3.6e-06 0.00044 21.0 3.9 1 23 735 757 735 757 0.95

3 5 1.7e-05 0.002 19.0 3.5 1 23 763 785 763 785 0.97

4 5 0.00013 0.015 16.2 1.8 1 23 791 813 791 813 0.98

5 5 0.013 1.5 9.9 2.9 1 22 819 840 819 840 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.6e-07	1.9e-05	25.3	1.0	1	23	707	729	707	729	0.99
2	5	3.6e-06	0.00044	21.0	3.9	1	23	735	757	735	757	0.95
3	5	1.7e-05	0.002	19.0	3.5	1	23	763	785	763	785	0.97
4	5	0.00013	0.015	16.2	1.8	1	23	791	813	791	813	0.98
5	5	0.013	1.5	9.9	2.9	1	22	819	840	819	840	0.95

Sequence Information

Coding Sequence: ATGCACCAAGGCGCATGCGGAAATGCACTCGACGCCCGTCCGCGTTTCGTTCGGTGGAGAGGGAGTGATGTGCAGCGGGTGTACGCAGTCAGTACAACGCCTGATAGCTTAGAACATACTTTTTGTTTATCAAGCTCCACACTTTTCGTTTTCGTTTTCCACTATATACAGTCCGGGCTCGCCAGCCGTCTGGGTTATACAATTGTAGAAGATTTATGGAGGACTAGTAAATCATCGAGTATTACAATGAGAcagGAAACGCCTCCGATGGAATCCGATTTGCCTTTTGATTTCAACTCAATTAAAGAAGAAGAATTTGACAAATTTGTTGACTATATTGTATTAGATCAACCAGCAGATCCAAATAACCCAAATCGAGCAGAGAGTTCATTACCCAGAAATctcaaattgaaaaaaattggaaaaaaaATCACTGGCGTAAAAAGTGCCATATACATTCCATTAGGCACAAGATTTGGTCCATTGGTAGGTGAAGTGTGTGTCAAAGAACACGCGCCAAACGGAAAACGAAAATACTTTTGGAGGGTCCAACTCATGCTAGCCCAAGATAATTTCTGGCGGAAAATGCGCCAACAGATTTATAAAGAGAATAAACCGTTCTATTACATAAACACGTACGATGAAACTAAATCTAATTGGATGCGGTACGTGAGTGCCCCATATTCACCACAATCTCAGAATTTGATTGCTTGTCAATGCGgaactgatatatttttttacacaatccGACCGATTTTTCCAAATGAAGAACTTCTTGTTTGGTATTGTCGTGAATTTGCTGAAAGGTTAAATTATCCATCAAGCGTTGAACAAATGATACAACGAATGCAAGGAAaaATACAAACTTCTACGTCTCCTACATTACCCATGCTAGCTGATGGCGCAGATACAGTTTCATCATCATCAACTCCTTCAACACCTCCACCTTTGCCAACAGATAGTAGTGATGTTACACTCAAGACCGGTAATCGGGTTCACTGGCAGGACGATGATATACGTAACGAGTTTGATAAAGCAATGACCAACAATGCGACTTCAATGCGTCGTGTAGTAATTAGTCCAGTTAAAGAATACATGGACAATGGAAATGCTGATGTTTTGAGGTTAGATGGGTTACGACTGAGACCCGTAGACGACGAAGGAAAAGCTCAAGGGTACGCTCAGTCTCATTCAGTACGGTCTGATGAAGGATATCATAGCCACACATACCACGACGATGCACCCACACCACCGGAACATTTATCTGATTCCGACGATAGTTCCAACTGTATTTTGGACTAcagtaaaaaatcgAAATTGCCAAAACCTGACGAGGAAGCAGTAGAAGTGGAAACTAACGAGTTTCTCaaagtgaaaattaaattacgcaAAGCATCCCAGTACAGAAAGGATTCAGATCAACCGCCAAAAGAGCAAACACCACCTCTGGTCGTGGTAGCAGCCGATCCAGTGATTGTTGTACGTTCTCAGTCACCAAAAAGATACGCTGAACCATCATCGTCCAGTGCACCGTGCAGTGACACGGTCGAATCGCTACCGAAAAAGCTTAAGCTCGATGCACCCGTTGTGCCTCCACCGCCATCGGTCATCTATCAGTATCCCAGGGATCAGAAGTCACTATTGGAGAACCTTTTGCTACAAAACAAAGATTCGAGCCCCCCGGCAGCACCCGCACCGATCGCGCCATCGATAACGCCTCCGCCGCAAATGCCGGTTGCCGATCAAACTTACATACAACGCAGCTACGTCAATGCGTCGGTTAGTCCAGATTCGTCTACTAAAGTACTGTCGCCCTTACACCAGATGCACCGTAGCCCACCGCCGCCGGCAATTCTTGTCTACCCTACGCCTCCTGGTCAACAGATGCAATACGTGCCGTATCACCACCAAACGCATTTATTCCCACCGCAGAACGGTGGTGGCTACCAGTGTCACTATCCCGTCAATCACACGGTAGAATCCAGCGCCAGTAGTCCGCCGGCGGGCTCCATGTCGCCAGACGATGTGTCACCATGCGGAAGTCCCGGCAGCACCAGTAACTCACGTGGGTACAGGTCTTTGCCCTATCCGATCAGCAAGAAAAACGGAAAAATGCACTACGAGTGCAACGTATGTCGTAAGACGTTCGGTCAGCTGTCCAACTTGAAAGTACATTTGAGAACGCACTCCGGCGAGAGACCGTTCAAATGCAAGACGTGTGGGAAGAGTTTTACACAGTTGGCTCACCTACAAAAACACAACTACGTACATACCGGAGAACGTCCGCACGAATGTGATGTATGTCAAAAACGGTTTAGCTCCACTTCTAACCTTAAAACGCATTCGAGGCTACATACCGGTGACAAACCGTTCGTTTGCGAGATATGTTCGTCGACGTTCACTCAATTGGTGCATTTAAAATTGCACAAGCGCATCCATACCAACGAGCGACCGTTCACCTGCCATTGTTGCCAAAAATCGTACATTAGCGCCAGCGGATTGAGAACCCACTGGAAGACCACTTCCTGTAGACCGCCATACACGAGCGGCAAGGACGATGCCACTGAACAGCAGATTTCCAGTCCTGATTACCAGGCGtatcatcaaaataattattcgaaCGGTATAATGGAACACGCTGACGacacaaatcaaaatatttacggCGGACCGCACGTTGGTGACAAACATGATGATGACGACGATATGTACGCTCATCTGCGACCACATCATCAACCAGCAATGACATCCGTCCAACCGGAAGAGATTCAACGACCATCGGTTATCGAACAGAGGCACTTTATCGAGTGCACATAA
Protein Sequence: MHQGACGNALDARPRFVRWRGSDVQRVYAVSTTPDSLEHTFCLSSSTLFVFVFHYIQSGLASRLGYTIVEDLWRTSKSSSITMRQETPPMESDLPFDFNSIKEEEFDKFVDYIVLDQPADPNNPNRAESSLPRNLKLKKIGKKITGVKSAIYIPLGTRFGPLVGEVCVKEHAPNGKRKYFWRVQLMLAQDNFWRKMRQQIYKENKPFYYINTYDETKSNWMRYVSAPYSPQSQNLIACQCGTDIFFYTIRPIFPNEELLVWYCREFAERLNYPSSVEQMIQRMQGKIQTSTSPTLPMLADGADTVSSSSTPSTPPPLPTDSSDVTLKTGNRVHWQDDDIRNEFDKAMTNNATSMRRVVISPVKEYMDNGNADVLRLDGLRLRPVDDEGKAQGYAQSHSVRSDEGYHSHTYHDDAPTPPEHLSDSDDSSNCILDYSKKSKLPKPDEEAVEVETNEFLKVKIKLRKASQYRKDSDQPPKEQTPPLVVVAADPVIVVRSQSPKRYAEPSSSSAPCSDTVESLPKKLKLDAPVVPPPPSVIYQYPRDQKSLLENLLLQNKDSSPPAAPAPIAPSITPPPQMPVADQTYIQRSYVNASVSPDSSTKVLSPLHQMHRSPPPPAILVYPTPPGQQMQYVPYHHQTHLFPPQNGGGYQCHYPVNHTVESSASSPPAGSMSPDDVSPCGSPGSTSNSRGYRSLPYPISKKNGKMHYECNVCRKTFGQLSNLKVHLRTHSGERPFKCKTCGKSFTQLAHLQKHNYVHTGERPHECDVCQKRFSSTSNLKTHSRLHTGDKPFVCEICSSTFTQLVHLKLHKRIHTNERPFTCHCCQKSYISASGLRTHWKTTSCRPPYTSGKDDATEQQISSPDYQAYHQNNYSNGIMEHADDTNQNIYGGPHVGDKHDDDDDMYAHLRPHHQPAMTSVQPEEIQRPSVIEQRHFIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01304428;
90% Identity: iTF_01032435;
80% Identity: -