Rnym004016.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- -
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000006.1:21731877-21736686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0019 0.23 12.5 2.2 1 23 209 231 209 231 0.97 2 9 0.00054 0.065 14.2 0.4 1 23 327 350 327 350 0.95 3 9 0.00018 0.022 15.7 0.1 1 23 385 407 385 407 0.95 4 9 0.063 7.6 7.7 3.9 1 23 549 571 549 571 0.96 5 9 1.7e-05 0.0021 18.9 10.5 1 23 577 600 577 600 0.97 6 9 6.2e-06 0.00075 20.3 1.3 1 23 609 632 609 632 0.97 7 9 2.6e-06 0.00031 21.5 1.8 1 21 637 657 637 659 0.94 8 9 0.012 1.4 10.0 2.1 1 23 701 723 701 723 0.98 9 9 0.00011 0.013 16.4 3.2 1 23 728 751 728 751 0.97
Sequence Information
- Coding Sequence
- ATGACTGAGGTCGACTATCGGTATATAGCGTTTGAAAATGATCACACATATTTGAAAACTACCAATAACAATGATGAAAATTGTCAATTGTTGCAAAACAGCATTTCTACAGTTgaagGCAAACATGATGCAATTATTTCATCTAAAactcaacaaaataaatttgataaaaataaaactataaaatatgaggTCAATTCAGATATACAGAATTCAACTGTGTTTTTTCTTCatgatacattaaattttccaTTATCTACAgactttaaaatatcaaaaaataaattacctattcAAAAAATTGCTCTTGGTAACAATTCAGGTACAAGACCTATTCAACCTAAACTACTAACAAATACTTCAAATGTTGTTCCCGTTACACAAATTCAATCAAgtgaaaaatttatttcatctCAAATTAATCtttcaaatacaaaattagaaaatataacATCAAAAAATACACCTGTGAAACCTACGTTGTCCATTAAATCACAGTTGAAACCTTTTATTAAACCTATTAagtcaattaaaaacaaaattgtttatgattataaaaacaatacttgCACTATTGAATTAGCTACTAATTTATGTCAGCGTTTATTGCGAGgagaaaacatatttatgtgtaGGAAATGTGATAAAATTTACACAGAACATAAAGATTTGTTAGATCACTATATGATTCACGATAACTGTAAAACAAACCTAATAAGTCAAGAAAAAGATAAAagGGAGACCACACCAATTGATATTGTAAAGAAAGAAAATAAAGATGTTGATAAAAAAGttatgaataatgaaaaaaatatttccaaaccAACTATACCAGTTATTAAATCTccattaaattctaaaaacaataaagttGTTTTTCAAGGAGAGTGTATTATGTGTCATTCAGTTTTTCCAGATCTTGGAGAACATATAAGAACTGTTCACCATAGTGACTTGACTAGAAATAGAGTTAATATTCATCGTTGTACAATTTGTGGTATGGAGTTTGATATTAAGCAGCAACTACGGGCTCATGAGTTGTCTGCGCATAAGTCTACCTATACACATACTTGTGAACATTGTCTTAAATACTTCTTATGTAAGGAAGACTTGGATACACACGTTGAATCTCATTATGGTGACATTATGAAGTATTTATGTCCATATTGTGATGCTGGTTTTCCTAATTCGAATGGATTAAGAACTCATCTCATTAATCATATTGGTTTTGATAGTTCTGAATACTCAACTTCAGAAACATCAGTTTATCAAATTGAATATAGTCCTACAAGACCACCAGAACAATATGATCATTTGTTTTCTGAATTAGATAATGTTTCGGATAACGTTGACGATGTTTATATAGAACAAGTTGATGATAATAGTTATCAAGTCAGTTTTGTAAAAGACAATGAAGATAATGCATCATCACAAATAAACTTGCTCATTGACGATGGCCATGAAATTGATACAGAACTAAATAAtatacctTCAGAAGATAACAAAGTTATCATCAATGAacaacaaaaatcatttttaaataaaaagcgAATAAGTTATACAGTGTGTAGAATATGCATGAATATTGTAAGTTATTCAAGAATTGGTAGGCATATGaagaaaaaacataataatgctGCTCCTTACCAATGTGAGATTTGTCACGCTGAGTTTAATCGAAAACACATCATGGATGACCATAGAAGAAaacacacaaataataaacctcacaagtgtACAGAATGTTCTAAATGTTTTACCTATAAGCATCATCTAAATAGGCACATGATGATAGTTCATAATTCTGATACATTAGAAAAAGTATTCAAATGTTCTGTATGCGATAAAGCATTTTCATTTAAGGAGTATTTAACACTACATGTCaaTAGCCGCCATAAGGGTAAACATTATATGTGTCAAGTTTGTGGTAAAAGTTTTTCTACCAATGCTGCACTGAATAAACACCAGTTATGCCATACAGACGAACGACCATTCATGTGTGAACATTGTGGACGAACTTTCAAATGTAAAACTCACTGTgacacacataaaaaaaatatgcatccTGAAGATAATGAATTAACACAACCACCAGAAAAATTCGAATGTGAACTttgtaaaaaactatttagtaCAAAAGTATACCGTGATATGCACCTTAAGAGACATAATGGTCAGGGTCATCAATGTGAGATATGTTACAAACTATTTGTTTCCAAAGCACATATGCAAaggcatattaaaataatgcatcGAAATACATAG
- Protein Sequence
- MTEVDYRYIAFENDHTYLKTTNNNDENCQLLQNSISTVEGKHDAIISSKTQQNKFDKNKTIKYEVNSDIQNSTVFFLHDTLNFPLSTDFKISKNKLPIQKIALGNNSGTRPIQPKLLTNTSNVVPVTQIQSSEKFISSQINLSNTKLENITSKNTPVKPTLSIKSQLKPFIKPIKSIKNKIVYDYKNNTCTIELATNLCQRLLRGENIFMCRKCDKIYTEHKDLLDHYMIHDNCKTNLISQEKDKRETTPIDIVKKENKDVDKKVMNNEKNISKPTIPVIKSPLNSKNNKVVFQGECIMCHSVFPDLGEHIRTVHHSDLTRNRVNIHRCTICGMEFDIKQQLRAHELSAHKSTYTHTCEHCLKYFLCKEDLDTHVESHYGDIMKYLCPYCDAGFPNSNGLRTHLINHIGFDSSEYSTSETSVYQIEYSPTRPPEQYDHLFSELDNVSDNVDDVYIEQVDDNSYQVSFVKDNEDNASSQINLLIDDGHEIDTELNNIPSEDNKVIINEQQKSFLNKKRISYTVCRICMNIVSYSRIGRHMKKKHNNAAPYQCEICHAEFNRKHIMDDHRRKHTNNKPHKCTECSKCFTYKHHLNRHMMIVHNSDTLEKVFKCSVCDKAFSFKEYLTLHVNSRHKGKHYMCQVCGKSFSTNAALNKHQLCHTDERPFMCEHCGRTFKCKTHCDTHKKNMHPEDNELTQPPEKFECELCKKLFSTKVYRDMHLKRHNGQGHQCEICYKLFVSKAHMQRHIKIMHRNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305923;
- 90% Identity
- iTF_01305923;
- 80% Identity
- -