Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: Hivep2
Assembly: GCA_036289425.1
Location: JAZAQC010000034.1:280944-285167[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.033 15.1 0.4 2 23 28 50 27 50 0.97

2 11 0.18 21 6.3 0.3 1 23 179 202 179 202 0.91

3 11 0.001 0.12 13.3 0.6 1 23 210 232 210 232 0.97

4 11 0.0001 0.012 16.5 3.3 1 23 238 261 238 261 0.98

5 11 0.012 1.4 10.0 2.9 1 23 523 546 523 546 0.95

6 11 0.0018 0.21 12.6 0.5 3 23 734 754 733 754 0.98

7 11 1.7e-05 0.0021 18.9 3.1 1 23 760 783 760 783 0.97

8 11 0.0068 0.82 10.7 0.5 1 23 810 834 810 834 0.97

9 11 0.8 96 4.2 0.5 1 23 911 934 911 934 0.90

10 11 0.00064 0.077 14.0 2.2 3 23 968 988 967 988 0.97

11 11 0.048 5.7 8.1 3.2 1 23 994 1017 994 1017 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.033	15.1	0.4	2	23	28	50	27	50	0.97
2	11	0.18	21	6.3	0.3	1	23	179	202	179	202	0.91
3	11	0.001	0.12	13.3	0.6	1	23	210	232	210	232	0.97
4	11	0.0001	0.012	16.5	3.3	1	23	238	261	238	261	0.98
5	11	0.012	1.4	10.0	2.9	1	23	523	546	523	546	0.95
6	11	0.0018	0.21	12.6	0.5	3	23	734	754	733	754	0.98
7	11	1.7e-05	0.0021	18.9	3.1	1	23	760	783	760	783	0.97
8	11	0.0068	0.82	10.7	0.5	1	23	810	834	810	834	0.97
9	11	0.8	96	4.2	0.5	1	23	911	934	911	934	0.90
10	11	0.00064	0.077	14.0	2.2	3	23	968	988	967	988	0.97
11	11	0.048	5.7	8.1	3.2	1	23	994	1017	994	1017	0.95

Sequence Information

Coding Sequence: ATGTCATCGGAAATGTTGCGTGTAGATAATCTGCGACAACGGTTGTTCTGCAATTCCGTGTTGGATACAAAACGGGAAAGCCGGTGTCCTGTGTGCAACGCTATGTTTTCAACCACGTACAGTATGCGTCTGCATTTACAGACCGTCCACATGGATTTAAAACCACAAAATCTAACCGCCAAAACGTTTTATCGCGagtttaacaataacaacagtataaacaataataacaacaataacagtagtaataacaacaataacaacaacacgGCCTTCACCGCAAAATCACCAGCTAAAACGACATCGTTCAACAAAAGTCCCGAACGTGCGCACGTCACACCTGTAAAATCTTCGTACAACGGCGACTCAACATGTAGCACAGACTTTAGCGATGGATATCCGTCGGACAAGGACTCGTATTTCGGCAGTTCGCCCAAAGATGAGATCCCTTTATCAGTTACTGGTGGCGGTTTCATGTCACAATCACCGGCCAACAAGAGAAGTAGCAATGGCCACATGAAAGCCAAGCGTACATACGCGTGCAGGTTGTGCTCGACCGTTTTCGGAAATCTGCGGGCGCTTAAAGGCCACAACTCGTCTAGCCACAATAAATCTACCAACGGCATGTACGCGTGCAACATTTGTGAGTTTGCCAGCACTGAAAAAGCGTCGCTAAACCATCACATGAAGGGCCACACGGGCGAGACACCGTACGTGTGCAAAAAGTGTTCGTACGCGTTCACCACGAAGGCAAACTGCGAAAGGCACCTGCGCACTATACATAAGGCGTCCAACGCCGAGGTAAAGGcatcaatattgtttaaaaacgaGGAAAAATCGACCGGATCAGTGCAGTCGGCAAATGACGAAGCAGCTACCGACAAGAGTGAAGAACTGTTCCACCACTTGCGCCTACAGCAGCACAATCAGGCAACGACGGACTATTCCCAGTACGAATCATCCGGCCAAAAAAGCTCGGAGGATGATGAGGACGAGTACGATGAGCCGCTGGACCTTAGCATGAAGCGTTTTAAACAGGACTTTGACAGCGAGCCGCAGGATTTGTCAATCAATAGTAAgaggtcgtcgtcgtcgtcgtctttTACAGCCGCCGCCACCGGCGGTGATCACACAGACGAGGAGGACGTTAACAAACCGACTGCTACGATGCCGTTCCGCGAACAATTTGTACCGCACGCCCCGCCCGGCTTCATGGACTTATCATTACCCACTCCTTTGCACGCGTATTTTCTCAACGAACACCGCATGTTTTTCAATGGAATGTACCCAGCCGCAGAACGGATGCTGCCCATACCACTAACCGTCGACATGATTCGTGCAATGCGGCAGATGAACGAACCGGTATCGGTCCCAGCTCAAGAGCCGGCCGACACCGTTGTCCCACCGAAGCCTGACACGCCCGAGCCTGCGATCGTACCACCTCCGCCACCTGCTTCATCGTCTGTGGACGTTACACAAAAACCAAAGGACACCAACGGGTTGCGATTGGTGATGAAAAACGGCATTCTGGTGCCCAAACAGAGGCGGTTCAGAACGGACAGGCCACATGTTTGCGAGACGTGCAAACGAGCATTCACATTGAAATCAAACCGCGATCGACACGTTAAAAACCAACATCCGACCGATTGGCACAAGAAACCAAGGTCGTTGTCATCCAAGTCGGAACCGCAGTTCTCGGCCGTCAAACAAGAACAGCAGGACACGTCGCCGATTTCGAATCAAGTTAAAATGGCCTTGTCGTTGAAATGTCGGCCGTCAGAACAATTGTTACGGACTGAAGATGAAGTAGACGAAGACGAAGAAGATGACGACATAGTGGAGGAGGAGGACAAACTCGTCATAGTGGAAGACGGTGGAGAGCATAACAAGCCCACTGAAGTTAAGGAAAAGTGCTCTGAGATCAAAGAGGAGTCCGCCGATCTGGTTAGTGTATCCAGATTGCTGGACAACGCTTCGCACCAGACGTTTCCGCAGTTCACCAGATCTGACGAGGACCATAATGAGGTGACCAGCAGTGAAGAAGAACACAGCGAGGCTGCTAGCTATTCTGAAAACGACGGTTCTAGTATTAACGCGGTGAACAACAATATCGATATAAATTTCAACACAGACAAAGATGAGAACCGGGAGAAGCGTAAGAAAGTTAGTGCATACGCGGCTGCACCCAACAGGGTTTTGTGTCCGTTCTGTTACCTTTCGTTCCCATGGACTTCGTCACTGAAACGTCATATCCGCACGCACACGGGCGAAAAACCGTATCAGTGCAAACACTGTCCGCTGTCGTTTTCAACAAAGTCTAATCGTGACCGGCATATCCTGCGCCTGCACTGTACACCACCTAGCAAGTCGGCCGCTTCGTCCGACAACGAAACAACCGCCGCAACGCCGGTCGACGCTAAGAACGCGTACAAGTGCACGTCGTGCCCGAACGTCGCGTTTTCCAAGCGCAAAAACTTGATAAGCCACATAAATCGGGTGCATTTTGATAAGAACAGTGGTGGTGGCGGTACGGGAGAAGATGACGAACGAGGCGGTGATGGTACTGAAGAAGATGGTGGTGAGTCGGAACGTGATTACTCAACAATGACTATGTTCAACGGATGGTGCGGCAATAATAATGCGGCCTCGGCGACTACTACAGCCAACACCACCACCTCGTCTATAGCCGCCACCACCCCATCCAACACGGTCACCGGATCCGAACCGTGTTTCAAGTGTCACCTGTGTGACAGCAGCTACTTGGACAGACAGGGCGCTTTGGACCACATCCGGATCGACCACGCCGAATGTTATGAGATACTGGTGTCGCAGGGAGCTATGGACAACGACCACGATTCGTCTGCCGTCAAACAAGACGACGTGGAAAATAGAAAGGTTCTATGTGCGTTCTGTCTACACCGTTTCTACTCTGCCGAAGACCTGCGTCGACACATGCGTACCCACACGAAGGAACAGCCATTCGCGTGCCTGTCGTGCAAGCGCCGGTTCACGCTCAAGCACAGCATGGTTCGGCACATAGCCAAAAAACACGGTGGCTGCCAAGACCAGCAATACGGAGGCAGTAGCGCTGGAGGTGGTAGCGACCACGAAAGAAGGTCCGCCAGCCCTCCAAACACCCCTCCACCAACGGGAGGTCCGGTCACCGTTTACGATGACTGCTGCAGCAACAACCGGACGGATACGGGACTGATCGGCACGCTGCTCGGCATCCGTGACAGTACTGTCATCGATCAGGTGTTGCAGACAAAGTCGCCGGAGGACGCAGCTAAAATGTTGGGAATCAAAAGCAGTAGCGACTAG
Protein Sequence: MSSEMLRVDNLRQRLFCNSVLDTKRESRCPVCNAMFSTTYSMRLHLQTVHMDLKPQNLTAKTFYREFNNNNSINNNNNNNSSNNNNNNNTAFTAKSPAKTTSFNKSPERAHVTPVKSSYNGDSTCSTDFSDGYPSDKDSYFGSSPKDEIPLSVTGGGFMSQSPANKRSSNGHMKAKRTYACRLCSTVFGNLRALKGHNSSSHNKSTNGMYACNICEFASTEKASLNHHMKGHTGETPYVCKKCSYAFTTKANCERHLRTIHKASNAEVKASILFKNEEKSTGSVQSANDEAATDKSEELFHHLRLQQHNQATTDYSQYESSGQKSSEDDEDEYDEPLDLSMKRFKQDFDSEPQDLSINSKRSSSSSSFTAAATGGDHTDEEDVNKPTATMPFREQFVPHAPPGFMDLSLPTPLHAYFLNEHRMFFNGMYPAAERMLPIPLTVDMIRAMRQMNEPVSVPAQEPADTVVPPKPDTPEPAIVPPPPPASSSVDVTQKPKDTNGLRLVMKNGILVPKQRRFRTDRPHVCETCKRAFTLKSNRDRHVKNQHPTDWHKKPRSLSSKSEPQFSAVKQEQQDTSPISNQVKMALSLKCRPSEQLLRTEDEVDEDEEDDDIVEEEDKLVIVEDGGEHNKPTEVKEKCSEIKEESADLVSVSRLLDNASHQTFPQFTRSDEDHNEVTSSEEEHSEAASYSENDGSSINAVNNNIDINFNTDKDENREKRKKVSAYAAAPNRVLCPFCYLSFPWTSSLKRHIRTHTGEKPYQCKHCPLSFSTKSNRDRHILRLHCTPPSKSAASSDNETTAATPVDAKNAYKCTSCPNVAFSKRKNLISHINRVHFDKNSGGGGTGEDDERGGDGTEEDGGESERDYSTMTMFNGWCGNNNAASATTTANTTTSSIAATTPSNTVTGSEPCFKCHLCDSSYLDRQGALDHIRIDHAECYEILVSQGAMDNDHDSSAVKQDDVENRKVLCAFCLHRFYSAEDLRRHMRTHTKEQPFACLSCKRRFTLKHSMVRHIAKKHGGCQDQQYGGSSAGGGSDHERRSASPPNTPPPTGGPVTVYDDCCSNNRTDTGLIGTLLGIRDSTVIDQVLQTKSPEDAAKMLGIKSSSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00135687;
90% Identity: iTF_00134839;
80% Identity: -