Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: PLAGL2
Assembly: GCA_036289425.1
Location: JAZAQC010000028.1:4200401-4205161[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0086 1 10.4 5.7 1 23 146 168 146 168 0.93

2 7 8.4e-06 0.001 19.9 2.7 1 23 174 196 174 196 0.97

3 7 3.2e-05 0.0039 18.0 7.5 1 23 202 224 202 224 0.98

4 7 0.024 2.9 9.0 0.1 2 23 232 255 231 255 0.94

5 7 7.4e-06 0.00089 20.1 0.3 3 23 264 284 262 284 0.96

6 7 5e-05 0.006 17.5 1.3 1 23 298 320 298 320 0.98

7 7 3.5e-05 0.0042 17.9 3.7 1 23 326 349 326 349 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0086	1	10.4	5.7	1	23	146	168	146	168	0.93
2	7	8.4e-06	0.001	19.9	2.7	1	23	174	196	174	196	0.97
3	7	3.2e-05	0.0039	18.0	7.5	1	23	202	224	202	224	0.98
4	7	0.024	2.9	9.0	0.1	2	23	232	255	231	255	0.94
5	7	7.4e-06	0.00089	20.1	0.3	3	23	264	284	262	284	0.96
6	7	5e-05	0.006	17.5	1.3	1	23	298	320	298	320	0.98
7	7	3.5e-05	0.0042	17.9	3.7	1	23	326	349	326	349	0.95

Sequence Information

Coding Sequence: ATGAGTACATCGACAGCCATTAATGacCACTGTCAATGGCCAAAAAATGAATCCAATGTCCAGATATCACCAGGTCGCCAATTGCGCTCACatgttttacaattatgtCCAAATTGTAATCAACCAATTCAATGTAAGACTGGACAGCAAAAtgtttgtgtgtgtttgtCTTCAACCCCAACTACATCCAGTGATCCTTCTTTTGCTAACCAatcaaaaaaaagaaacagaAAATCTTTGCAATTACCAGCCACGTGTAAACGTCAGCTGTTTGATTTATGTTACGAACAGCCCGAAAGTACGGTGAGTGTAACCGATACTCAAAAATCAACAGTGGCAGCTGAGAGTACTGAAAGTGGAGAGAGCTCAAGTACTTCTGTACAACAGTcacaacaacaacagcaacTGGGAGTCAATCAGATGTTGAGAGGTCGACACATATGTCAAGTCTGTTTTAAGTCGTTTACAAGTCCATGTAAATTGACACAACATTCTTATTCACATACTGGTGAAAAACCATTTGTGTGCAAACACTGTTCAAAAgcattttcatcaaaatttaaactagtTCGTCATGTATTAATACATTCTGACCAACGTCAATATCATTGTACAATTTGTGATCGTACTTTTCACAGGaaagatcatttaaaaaatcatgcCAAAGTACATAATCCCATTAAACGGACTTTACAATGTGATCGTCCTGGTTGCTCAAAAGAGTACAGTTCAGTGCTTAGTTATCGTAAACATATAGCTGTACATTCTGTAGAAGAAGGATTCCTTGACTGTAAGATTTGTAGTAAAGTATTTGAATCTAAAGATGAGCTCATGTACCATTTGAAAATACATTCAGGATCACGGGTAATAAAGACTCCAGctgataaaaaatatcgatgCAACTTTTGTGACCGTAGTTTTTATACTGGTAAAGATGTCCGGCGACATATGGTTGTGCATACTGGTCTGCGAGATTTCCTTTGTCAATTTTGCCCACAACGATTTGGTCGCAAAGATCATCTTACTCGTCACATAAAAAAgagtcataatataaatgcgaGTAAGAAATCCAAACCAAAAAAACCAACTGAACTGTATAAAAGTAAATCAGTTGAAGCAATTTATCTTGAAACATGTGGTCAGCCATATAAATTAGAAAGGAAAGTAGCAGAAACAGTAACTAGTGGAGATTTCATAAAACAAGAGAATTCATCTACAATTTCGTCAGGAATAGAAATGTTCCATTCTTCTAATATaactagttttaattatagtgAAAATAGTAATGAGACAGTTATTCAAACTGTTGGATCATCCAGTGAAGTCAATTTACCAGTTATAAGCTATGAACCTCAACCGTCATATCCAGTTGATGAACTGAAAGTATTTGATACAACCTTGACCAATCAGCTAGCTGATAATTACGAAGAATCAACCAATCCTGAAATGCCTGGATTATCTCAATTAATTACTATGATACCATCTTCAACCCTAACTAATATCGAGCCTAATCTTTCAGTACTAACAAGTCACGAACCAACTATTTTGCCTACTCAACATGTAGTTGGACATGAGCCAACACAACTTCAAGTTGGTGAATACCTAACATCTTCATCAGAAATATTGTCTGCTCTTTTACGACAAACTTCTGAAACAGGTACTACACCATTGCCAGggtttaatcaagtttttcatcaacaacaataa
Protein Sequence: MSTSTAINDHCQWPKNESNVQISPGRQLRSHVLQLCPNCNQPIQCKTGQQNVCVCLSSTPTTSSDPSFANQSKKRNRKSLQLPATCKRQLFDLCYEQPESTVSVTDTQKSTVAAESTESGESSSTSVQQSQQQQQLGVNQMLRGRHICQVCFKSFTSPCKLTQHSYSHTGEKPFVCKHCSKAFSSKFKLVRHVLIHSDQRQYHCTICDRTFHRKDHLKNHAKVHNPIKRTLQCDRPGCSKEYSSVLSYRKHIAVHSVEEGFLDCKICSKVFESKDELMYHLKIHSGSRVIKTPADKKYRCNFCDRSFYTGKDVRRHMVVHTGLRDFLCQFCPQRFGRKDHLTRHIKKSHNINASKKSKPKKPTELYKSKSVEAIYLETCGQPYKLERKVAETVTSGDFIKQENSSTISSGIEMFHSSNITSFNYSENSNETVIQTVGSSSEVNLPVISYEPQPSYPVDELKVFDTTLTNQLADNYEESTNPEMPGLSQLITMIPSSTLTNIEPNLSVLTSHEPTILPTQHVVGHEPTQLQVGEYLTSSSEILSALLRQTSETGTTPLPGFNQVFHQQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00942177;
90% Identity: iTF_01305920;
80% Identity: -