Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: -
Assembly: GCA_036289425.1
Location: JAZAQC010000012.1:12272176-12275160[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.5 4.2e+02 2.2 0.7 2 11 129 138 128 139 0.91

2 16 0.059 7.1 7.8 0.1 2 23 152 171 151 171 0.80

3 16 0.016 1.9 9.6 0.6 1 23 183 206 183 206 0.97

4 16 0.17 20 6.4 0.5 1 20 247 266 247 268 0.94

5 16 0.079 9.5 7.4 0.8 2 17 274 289 274 295 0.77

6 16 0.12 14 6.9 0.6 2 23 306 328 305 328 0.94

7 16 1.2e-05 0.0014 19.4 0.4 2 23 335 356 335 356 0.97

8 16 0.00043 0.052 14.5 1.7 1 23 362 384 362 384 0.97

9 16 6.1e-05 0.0073 17.2 2.3 1 23 390 412 390 412 0.99

10 16 0.052 6.2 8.0 0.3 2 23 471 493 470 493 0.91

11 16 0.0039 0.47 11.5 1.5 1 23 504 526 504 526 0.97

12 16 0.0013 0.15 13.0 2.8 1 23 608 631 608 631 0.97

13 16 0.03 3.6 8.7 0.7 1 23 646 669 646 669 0.94

14 16 4.8e-05 0.0057 17.5 3.2 3 23 681 701 680 701 0.99

15 16 0.98 1.2e+02 3.9 0.5 2 23 762 783 761 783 0.92

16 16 0.0067 0.8 10.8 0.7 2 23 796 817 795 817 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.5	4.2e+02	2.2	0.7	2	11	129	138	128	139	0.91
2	16	0.059	7.1	7.8	0.1	2	23	152	171	151	171	0.80
3	16	0.016	1.9	9.6	0.6	1	23	183	206	183	206	0.97
4	16	0.17	20	6.4	0.5	1	20	247	266	247	268	0.94
5	16	0.079	9.5	7.4	0.8	2	17	274	289	274	295	0.77
6	16	0.12	14	6.9	0.6	2	23	306	328	305	328	0.94
7	16	1.2e-05	0.0014	19.4	0.4	2	23	335	356	335	356	0.97
8	16	0.00043	0.052	14.5	1.7	1	23	362	384	362	384	0.97
9	16	6.1e-05	0.0073	17.2	2.3	1	23	390	412	390	412	0.99
10	16	0.052	6.2	8.0	0.3	2	23	471	493	470	493	0.91
11	16	0.0039	0.47	11.5	1.5	1	23	504	526	504	526	0.97
12	16	0.0013	0.15	13.0	2.8	1	23	608	631	608	631	0.97
13	16	0.03	3.6	8.7	0.7	1	23	646	669	646	669	0.94
14	16	4.8e-05	0.0057	17.5	3.2	3	23	681	701	680	701	0.99
15	16	0.98	1.2e+02	3.9	0.5	2	23	762	783	761	783	0.92
16	16	0.0067	0.8	10.8	0.7	2	23	796	817	795	817	0.93

Sequence Information

Coding Sequence: ATGCCGGCTAACACGGGACCTTCGAAATTTAAGCGGGTGTCCTTTCGGAAACCGCGGAAACGTCGCTACTGCGCGGTGTCGCGTGGTCACCGAACGTCGTTCGACTTGACGAATCAAGTGATCGTTTACTTCGAACCGGGAGGCAGCGGAAAATACGAAGTGGTTGGTGGCAGCACTCCAGATTACGGCGGCGGTGACGAGCACTCCCCTGCGGGACAAATGTCAGTCGGATGCAACGTGACACCGGTAGACGCGAACCGCAAGGGCAGGCCTAAGGGATCGAAGAATAAGTCGCCGCCATCGTCGTCATCACCATTGGGATCCAGCGCGTTCAACTACCGGTGCCAGAAGAGGTCGCTGACGTACACGTTCGCTGGTACGGTCAAGTGTAAGTCGTGCAACCGGACGTTCAACGGCGACCCGGTGGCCCACTGTCTCGAGCATCACAAATCCGTGTGTCCAATATGTGGCCGTACGTACCGGCCACCGCTGTCCGCGCACATCAAGTCGCATGGGACCCGGCACGTGTCACTGACTGTTTCTTGTTACGAGTGTTACGCGTGCAAGGAGAAATTCGGTAACCATTCTACTATGGCTGAACACATACTGACCGTACACTCCGTCACGGCCGTCGAGTGTTCGCTGTGCGGTGCTGTCGCGTTCGAAACCGTCGGCGCGGCCGTCAATCACTTGGTAGACGCACACTGTCCGCGGAAGACGTTCAGCCACCCGACCGTGTACCGGTGCCGAGTGTGCCTTGCTGGCTTTAAAACCCAAATCAACGTGCTGCGGCACGCGTGTAATAAGATCAAGTCTCCGCAATGCGGGCAGTGCGGCAAGACGTTCCCGTCCAAGATGCGATACGCGTTTCACCTGCAGTTTCACGAACACCCAAAGTGGGCGACCATGCACCTGCATTGCGACTTATGCCTAGCCGAGTTCGACGACGAGTATCAACTGTACGATCACATCCGGTTCCGGCACGAGCTGCACGATAAGGCGGTGTGTGAGGTGTGCGGCCGGACGTTCAAGTCGTCCATGGGTCTCAACATCCACCGCCGGTATCACAACGGGTCACGGGACTTTACGTGCAAATCGTGCGACAAGTCGTTCTTGAACAAGTCCACACTCCGGGAGCACGAGATCTCGCACATGGACGTCAAGCCGTTCCAATGTCACATATGCGGCCAGTACCTGAGCCGCGCATCCAGGCTCCGGTCGCACGTCAAGACACACCGGGCCGCCGAGTCGACCGAGCAAACGTGTTATGGCTGCGTCCAATGCGGTTATGTGGCGCCCAACTCAGCCGCGGTCGCCGATCACTCCAGCAAGGAGCATTGCGGCGATGACACACACTCGGCGGCGGCAGACGAGTATGGATGTTACGCGGTACAACTGTCATCGGTGGTCAAATGCGAGTACTGCGATTCGACATATCTAGATGCAGTGCACTTGAACAGACACCGTGACGCGGCGCACGCGGGCGGAGGATCTGGCGACGCGGAGCCGTTCATCTGCGTGGTGTGTTCGTCCACATTCAGCACGTACTCCAGGTTGACCACGCACAAGTTGACGCATGGCATAAATATGGAGTCCTCCTGCAACGCGCCTGCTCAGCAGCAGTTTCAGCAACAACAAAAACTACAGCAGCAGCGACGGCATCCCGACCGTGACGGTCAGATGCAACTCGCACCTGACCAGGTCCCCGATCGGTTCGAAATACCGCAATTTTTCTCTTGTGAGTACTGCGCCAAGATGTGCTTGCACTACACGTACTTTTGCCTACATCGGCGGCTCAAACACCCGCCTGGTGTGCAGACACACACGTGCGACCAGTGCGGCATGGACTTCAAAACTTCCTGGAGACTGACATACCACAAAAAAACCGTGCACGGGCACCCAGTGGCCGCCGCAGATGAAAAGCCGGCTGAGATGTTCAACTGCACAGTGTGCTCTCGGCAGTTCGTCAAAATTGGCGCGCTCAACTTGCACAAGACTCGCACGCACATCGATGTGGTCGGCGACGTGTGCAAGAACCTGTGTCACCTGTGTGGCAAGTTTTTCAGTTCAGAGTTTTCGCTCAAGTCGCACGTCAAGACGCACGAGTTCGTTATTGGCAATTGCACCGATGATCACACGCACAACGACAACGATTACCGCAATTGCGAAGAACCCACTACGATAGCGTCGCAGACGGTGCAGGCGCGACCGAATTACCGGCGGCGCACGTACCGGAAACCAGCGATCGCCAACGCCGTACGTTTGTCAATGCCGGTCAAGAAGTCGTGTCCATACTGCACCCATACGACCGACGACGATACGGCGTTCATCGAGCACGTCAGCGGTCACATCCGGTGTTGCAATCCCGTATTGCCGGCGGGCACCGTTTGCGAGCTGTGCGACGATCGTTTCGCTGACTCCACGCAACTCAAGCACCACCTGGACGACCACATGAACGCGAACCAAGGTGTTCTGTGTCGGATGTGCTACTCACCGTTCCTGTCGGCTGCCGCGCACGATGCGCACGTGGCCGCGGGATGCCAGTTTACCACGATGATGCCGGTCATCGGGTTCGGGAACTCAGTCCTTGCCGCCGTCACGTCTGATGTGAAGTTCACCGACCCGTCTACCGCTGCCACCCCGATCGACGTGAAGTTCGCCGACCCGTCCACCGCTTCCACCCCGCCCGACGTGAAATTCGTCGGCACGTCCGCCGCCCCGCAGTCCGACGCCCGTCCGCTGATCGTCGACTGTTCAGAGATATTCGGCAAAGGCGACGTGGtcacgtcgtcgtcgtcggccGAGCCGACGCTCGCTAAGGAACCGTCAGCTGACGATAAATCAACGGAGACGTCCGTGATCGACGAACTCCTGTCCATACTGTCCACACCTCGTTCGTTGGCCGCGCTGGATAAGATTGATATCCAACCGTCGCACGACATGTCGTTGGACGCAATATTCAACAGCTTCTCCACCGCAGACTGA
Protein Sequence: MPANTGPSKFKRVSFRKPRKRRYCAVSRGHRTSFDLTNQVIVYFEPGGSGKYEVVGGSTPDYGGGDEHSPAGQMSVGCNVTPVDANRKGRPKGSKNKSPPSSSSPLGSSAFNYRCQKRSLTYTFAGTVKCKSCNRTFNGDPVAHCLEHHKSVCPICGRTYRPPLSAHIKSHGTRHVSLTVSCYECYACKEKFGNHSTMAEHILTVHSVTAVECSLCGAVAFETVGAAVNHLVDAHCPRKTFSHPTVYRCRVCLAGFKTQINVLRHACNKIKSPQCGQCGKTFPSKMRYAFHLQFHEHPKWATMHLHCDLCLAEFDDEYQLYDHIRFRHELHDKAVCEVCGRTFKSSMGLNIHRRYHNGSRDFTCKSCDKSFLNKSTLREHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHRAAESTEQTCYGCVQCGYVAPNSAAVADHSSKEHCGDDTHSAAADEYGCYAVQLSSVVKCEYCDSTYLDAVHLNRHRDAAHAGGGSGDAEPFICVVCSSTFSTYSRLTTHKLTHGINMESSCNAPAQQQFQQQQKLQQQRRHPDRDGQMQLAPDQVPDRFEIPQFFSCEYCAKMCLHYTYFCLHRRLKHPPGVQTHTCDQCGMDFKTSWRLTYHKKTVHGHPVAAADEKPAEMFNCTVCSRQFVKIGALNLHKTRTHIDVVGDVCKNLCHLCGKFFSSEFSLKSHVKTHEFVIGNCTDDHTHNDNDYRNCEEPTTIASQTVQARPNYRRRTYRKPAIANAVRLSMPVKKSCPYCTHTTDDDTAFIEHVSGHIRCCNPVLPAGTVCELCDDRFADSTQLKHHLDDHMNANQGVLCRMCYSPFLSAAAHDAHVAAGCQFTTMMPVIGFGNSVLAAVTSDVKFTDPSTAATPIDVKFADPSTASTPPDVKFVGTSAAPQSDARPLIVDCSEIFGKGDVVTSSSSAEPTLAKEPSADDKSTETSVIDELLSILSTPRSLAALDKIDIQPSHDMSLDAIFNSFSTAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01329253;
90% Identity: -
80% Identity: -