Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: -
Assembly: GCA_036289425.1
Location: JAZAQC010000025.1:2615944-2624378[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.4 2.9e+02 2.7 0.3 2 17 130 145 129 146 0.87

2 10 0.0071 0.85 10.7 0.5 1 23 337 360 337 360 0.95

3 10 6.3e-05 0.0076 17.1 3.0 1 23 366 389 366 389 0.96

4 10 0.6 72 4.6 1.2 2 23 532 553 531 553 0.91

5 10 0.00033 0.039 14.9 0.0 1 23 559 581 559 581 0.97

6 10 1.6e-06 0.0002 22.1 0.7 1 20 587 606 587 609 0.94

7 10 8.3e-05 0.01 16.8 5.7 1 23 615 637 615 637 0.99

8 10 0.00019 0.023 15.6 0.7 2 23 644 665 643 665 0.97

9 10 3.8e-06 0.00046 21.0 0.3 1 23 671 693 671 693 0.97

10 10 0.0015 0.18 12.8 1.9 1 23 707 730 707 730 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.4	2.9e+02	2.7	0.3	2	17	130	145	129	146	0.87
2	10	0.0071	0.85	10.7	0.5	1	23	337	360	337	360	0.95
3	10	6.3e-05	0.0076	17.1	3.0	1	23	366	389	366	389	0.96
4	10	0.6	72	4.6	1.2	2	23	532	553	531	553	0.91
5	10	0.00033	0.039	14.9	0.0	1	23	559	581	559	581	0.97
6	10	1.6e-06	0.0002	22.1	0.7	1	20	587	606	587	609	0.94
7	10	8.3e-05	0.01	16.8	5.7	1	23	615	637	615	637	0.99
8	10	0.00019	0.023	15.6	0.7	2	23	644	665	643	665	0.97
9	10	3.8e-06	0.00046	21.0	0.3	1	23	671	693	671	693	0.97
10	10	0.0015	0.18	12.8	1.9	1	23	707	730	707	730	0.94

Sequence Information

Coding Sequence: ATGGATGCTCAAACAGATATCAAGctgaacaaaatatacatttctttctCTCAACAAAAAACTGGTTTGAATTTTGCCAACAAAATAAGTACATCACATATAGattggttaaaaaatattatggaagTGAAATTAGTTGCTGAAATACTGAGCTCATCAACAGCTGATGCCCTAGAAGCATTAAATTGTCTTAATGTTCctgaatttaaaaacagtGAGTTGTATAATCAAaaTGTGAAGAAAACTGATGATGATAACTTGGCAGAACTAGATTTAGATGACGGTTGTTTTGATGTTTTAAAAGATAATacCTTTTTAAGTACACAATCACAAATATCTTCAAGTAATATGGCTTCTGCTTTAGAAGAAAGAGAGGAACTAagttcaaaatgttttatatgcaATGTCAAAGTTACTACTCGTTcatcatacaatatttattgtacttttaTGCCTCAAAGAGAGTTATTGTTAATAGATGTCATgtctaaaatacttaaaaaggtTTTAAATCCTACTCAAATGAGAAGCTCACTATTGTGTCGAAGgtGCTTTACACTTTTTGATGAGTTGGATCAGATATCTACACGTTTTAAAAAGCTTCAAACTGACATTATTAAACGTTACACTTCTACTTGTAATGAATATAAagatgaaaatttttttaaaattgtgaatAGTATGACTccaataaaaattgaagaacTTTCACACAGTGAACAAGAAAATGATAACAAATCCtttaatgatgatgatgatgaaaaTAGCGAAAAATCATCCATAGCTTTAAATGAgatTGTTGATAATATCATCAATAGCATACAAGCTGATGAAACTGTGGACAATAATGAAGACATTAACAAATGTACTACTGATACTTCAAAAGATAAAACTGTATTAACTAATGAAGATATTACAGAACATATTGATGCAGTAGATATCCCTTTATCTATTGTTGAAGGATCTACCTGTGAAACAAaatcaaGGAAACTAagtgttgataataattacaaatgtgAGCAATGTGATGATTCTTTTCTTCAAGCTTCAGATTTAAAGAATCATTTTAGTATGGTTCATAAAAGTCCTAAGTGTTTCTTTTGTTCTGTTTGtgataaaaatttttcaaCCAAACAAGCATTACACAATCATTTGTCCAAAGAGCATAACACTTTAGATAAAAAGACAATTAATGATCAAATCGATTCAATTTCTCCAGCAGTTAAAActGAAAATGAAACCTCCCTTTGTGATACGGATTCAAACATAGTCAGTGAAGCTAGTActgattatataaatgatgCTCCCGAAGGTGTGGTAATTGACGTGAAACCTGAATTTTCCATTGATAATAGCATGTATTTAGAGGAAGTTGTACAAGAAGAAAATGAAGATGATGATTTTGAATGGAAAGAAGAACAACAACTTAACTATATTGAAGAAAATATCATAGAAGATAGTTCAAGTGCCATTGATGAAACAATAACACCTTCATCGGGATCAGAAAAATctgataaaaaacaaataaaaaaagggcGAAAAAAAAGGGGTAGCTCACGTTCTGGTGAACGTGCATGTTTGCCAGCTATACATAGTTGTATACTTTGTGGCAAAAAATGGAGGACAGTCACAGAGTTGAAATCGCATGTACAATCGCACAGTTCTCTTAGACCTTATGTCTGTGagatATGTGGTCAagcatataaaatgaaaaaagctTTAGATGTGCACATTGGAATGCATAATGGTATACATCCTTTTACTTGTGAATACTGTAATAAGTCTTTTACACAAAAAGTTGGTCTACAAAAACATATTCCCATTCATACTGGATATACACGGTTTCAATGTGATTTGTGTGGGAAGCGATTTATTCATCAAAAAAGTTTTCATATACATACAATGACTCATACAGGTGAAAAACATGTTAAATGTTCTGAATGTGGTTTGGCTGTTTTATCTCAGTCACATCTTAAACGACATTTAAGAGTTCATACTGGAGAGCGACCATATGCTTGTCCAATATGTGGCAAACGTTTTGCAGAAAAGTATAACATGAATGCTCATGTGCATATTCACGAAAATAACTCAGGAAATGCACCAAGAAGAAATAGAAATCATATatGTCAATTGTGTGGTATGAGTTATGATCGAAAACATAAACTTGAATATCATTTAGCTTCAGCACATAACAAAATTGATAGTAAACTTTCTCAAGATCAACAATTGGTGCAACTACAACAAccaaaaattgaatactttCAAGAAaattccCAAGGTCATCAAATCATCAATGTGGATAATAATGCTATCGAACACAATGGTAGCACTACAATGATAACTGTTAGTGGTGTCAAACTTCCGATATCCTTAGATGGTGCTCCAATTATGGTTACTACAATGCCACAAGAACCCCATACTACCAATCTTGTACCGCTCAATATACCTGCAGGTTCTCTTCTTACTTACAGGCCATCAAACACAAATGATAATACTGATCAACAGATGGTTGATGGTTCACAAAACTCTTATATGCCACAAAATCCTGTTACAATACAATTGTCTTAA
Protein Sequence: MDAQTDIKLNKIYISFSQQKTGLNFANKISTSHIDWLKNIMEVKLVAEILSSSTADALEALNCLNVPEFKNSELYNQNVKKTDDDNLAELDLDDGCFDVLKDNTFLSTQSQISSSNMASALEEREELSSKCFICNVKVTTRSSYNIYCTFMPQRELLLIDVMSKILKKVLNPTQMRSSLLCRRCFTLFDELDQISTRFKKLQTDIIKRYTSTCNEYKDENFFKIVNSMTPIKIEELSHSEQENDNKSFNDDDDENSEKSSIALNEIVDNIINSIQADETVDNNEDINKCTTDTSKDKTVLTNEDITEHIDAVDIPLSIVEGSTCETKSRKLSVDNNYKCEQCDDSFLQASDLKNHFSMVHKSPKCFFCSVCDKNFSTKQALHNHLSKEHNTLDKKTINDQIDSISPAVKTENETSLCDTDSNIVSEASTDYINDAPEGVVIDVKPEFSIDNSMYLEEVVQEENEDDDFEWKEEQQLNYIEENIIEDSSSAIDETITPSSGSEKSDKKQIKKGRKKRGSSRSGERACLPAIHSCILCGKKWRTVTELKSHVQSHSSLRPYVCEICGQAYKMKKALDVHIGMHNGIHPFTCEYCNKSFTQKVGLQKHIPIHTGYTRFQCDLCGKRFIHQKSFHIHTMTHTGEKHVKCSECGLAVLSQSHLKRHLRVHTGERPYACPICGKRFAEKYNMNAHVHIHENNSGNAPRRNRNHICQLCGMSYDRKHKLEYHLASAHNKIDSKLSQDQQLVQLQQPKIEYFQENSQGHQIINVDNNAIEHNGSTTMITVSGVKLPISLDGAPIMVTTMPQEPHTTNLVPLNIPAGSLLTYRPSNTNDNTDQQMVDGSQNSYMPQNPVTIQLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01305890; iTF_00973251; iTF_01304390; iTF_01329234; iTF_00135640; iTF_00136351; iTF_01167944;
90% Identity: iTF_01304390;
80% Identity: -