Basic Information

Gene Symbol
-
Assembly
GCA_036289425.1
Location
JAZAQC010000018.1:2187361-2199759[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0044 0.53 11.3 1.3 3 21 48 67 46 68 0.93
2 9 0.054 6.5 7.9 0.4 1 13 76 88 76 89 0.93
3 9 0.00012 0.015 16.2 1.1 3 21 107 126 105 127 0.93
4 9 3e-07 3.6e-05 24.4 3.8 1 23 135 158 135 158 0.97
5 9 2.6e-05 0.0032 18.3 1.8 1 21 179 200 179 201 0.96
6 9 3e-06 0.00036 21.3 0.3 2 23 210 232 209 232 0.95
7 9 0.00041 0.049 14.6 1.9 1 21 243 264 243 265 0.95
8 9 0.00019 0.023 15.6 2.6 1 21 281 301 281 302 0.95
9 9 0.055 6.6 7.9 2.3 6 23 315 333 310 333 0.86

Sequence Information

Coding Sequence
atgaaagcattttatgatatattccTATTGTTTGCGAAAAGTGGTAAAGATGAAACATTGGAAACATTGGAAAAGTTTGCTATACAagatttgacatttttaaatgGTACTCATTTGGTTAATGACGAAGAAGAAATTCATTGCCCCAACAGATGTGGTCGTAAGTATAAGCATAAAGGCAGTGTAGCTAGACACTTGAAGTATGAATGTGGAGTGAATCCTAAATTCCAATGCGTTATTTGCCGCAAGCCTTTCAAGCAGCaaatacgtataataagtaCTGTATCATTAGTCAACAGTTTTGAAGAAGTTATTATATGCCCTAAAAATTGTggcaaaagttataaaaatgtatcttgcttaaacaaacatttaaaatatgaatgtaaTAAAGCACCACAATTTCAGTGTCAATTCTGTGATAAAAAGTGTAAACGTCCtgataatttaagaaatcatATGCGATTAGTACATGGTTATGCAGgtttACACTTATATAATCCTACatcattgttaaataattctgAAGGTGTATACACATGCCCTCAAAATTGTGGTAAAACctacaaatattattccagcctttacaaacatttaaaatatgaatgtaataaaataccacAATTGAAGTGTCTATTCTGTGATAAAATGGTTAAGCGgcctgataatttaaaaaatcatatgctAATAGTACACAAATATATGTCAAagatgCCTGTAACCAATTATATATGCAACAACAATTGTGGTcgaagttataaatataagcgtAGCTTATATAATCACCAGAAGTTTGAATGTGGAGTTCCGCCAAAATTTGaaaacaataattactttGCATTTCCATGTCATCGGTGCAATAGAATGTACAAACATAGAGCTAGCTTGAATAGTCATTTAAAGCTTGAGTGCGGTGTAGCACCACAATTCCATTGCATCGCGTGCGGTAGACAATTCACTTGGAAGCAACATCTGAAGCGTCATATGGTCGCTGTGCACAAGCTtttgaacataaaataa
Protein Sequence
MKAFYDIFLLFAKSGKDETLETLEKFAIQDLTFLNGTHLVNDEEEIHCPNRCGRKYKHKGSVARHLKYECGVNPKFQCVICRKPFKQQIRIISTVSLVNSFEEVIICPKNCGKSYKNVSCLNKHLKYECNKAPQFQCQFCDKKCKRPDNLRNHMRLVHGYAGLHLYNPTSLLNNSEGVYTCPQNCGKTYKYYSSLYKHLKYECNKIPQLKCLFCDKMVKRPDNLKNHMLIVHKYMSKMPVTNYICNNNCGRSYKYKRSLYNHQKFECGVPPKFENNNYFAFPCHRCNRMYKHRASLNSHLKLECGVAPQFHCIACGRQFTWKQHLKRHMVAVHKLLNIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-