Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: -
Assembly: GCA_036289425.1
Location: JAZAQC010000006.1:720996-731046[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.5e-08 3e-06 27.8 1.7 1 23 277 299 277 299 0.98

2 8 6.1e-05 0.0073 17.2 1.8 1 23 305 327 305 327 0.97

3 8 3.2e-06 0.00038 21.2 0.2 2 23 336 357 336 357 0.97

4 8 4.5e-06 0.00055 20.7 0.8 1 23 363 385 363 385 0.98

5 8 1.1e-06 0.00014 22.6 8.1 1 23 391 413 391 413 0.97

6 8 6.8e-07 8.1e-05 23.3 1.8 1 23 419 441 419 441 0.98

7 8 2.8e-05 0.0034 18.2 4.9 1 23 447 469 447 469 0.97

8 8 2e-06 0.00024 21.8 1.0 1 22 475 496 475 496 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.5e-08	3e-06	27.8	1.7	1	23	277	299	277	299	0.98
2	8	6.1e-05	0.0073	17.2	1.8	1	23	305	327	305	327	0.97
3	8	3.2e-06	0.00038	21.2	0.2	2	23	336	357	336	357	0.97
4	8	4.5e-06	0.00055	20.7	0.8	1	23	363	385	363	385	0.98
5	8	1.1e-06	0.00014	22.6	8.1	1	23	391	413	391	413	0.97
6	8	6.8e-07	8.1e-05	23.3	1.8	1	23	419	441	419	441	0.98
7	8	2.8e-05	0.0034	18.2	4.9	1	23	447	469	447	469	0.97
8	8	2e-06	0.00024	21.8	1.0	1	22	475	496	475	496	0.95

Sequence Information

Coding Sequence: ATGGGAGACGCCAAGTGTGATAATCACGAAAACAGACTGATGTTCAGTTTACAACAAATGATGAATTCTGAACATTTCGCAGACGTTGTTATATGCTGCTCCGACGGATACAAATTAAGAGCCCACAAAGTCGTACTAGCGTACTGCAGTTCGTATTTGCaaACACTGTTCCTCGACCATCCTGGACCGGACGACAGCGTTACGATCATCCTACAGGACGTCGGGCACGAGGACGTGGGCCGCGTCCTGGAGTTTGTGTACACTGGTACGGCCGTCGTCCCTGGACACAGGATGGACGGTTTCGTTACGGCCGCTGGAGCCTTGGGAATCGGGCCGCTCCTGGACCCGCGAAGGCACTTGGAAATGTTCTCGGTCCAGCCACCGGCTCCCCATCACCACCCGTGTCCTCCAACCACAGTTGTGAACGATCCGACGCCACTGACGACGACACCGCCACAGCAGCAGCATCCTTATTGCAGGGTCCGTCAGCCGCCCAGGACTACGGGCATTCTGACGCCGTCGCCGTGGGCACAGAATTCCCGTCCACCGTGTGCCACTCCCAGATACTCGACTCCAAAGACTGTGCAACCTGATTCCCTAGTGATTCCGGTGCACCCCCCGACATCAAACCCGATTCAGGTTACGGAAATCCAAAGAGGACCGCTTCCTATTCCGTTGCCACCGACGCCGCCGGAAGAGCCTTCGATTGTTTCGATACCACCGTCGCCGTCAACCGACAGTGACAGAgacacaaaattaaaagttaccaGCGATGCTAACAATAATGGGATTCCGGAAAAAGACCGAAATGCGAATCAAACAAAAAGTCATGTTTGTCAAGAATGTGGGAAAACTTTCGTAACCAAAGCGTCTCTTAAGATCCACCAGAGGACCCACACGGGCGAAAAACCGTTCGTGTGCGAGTCGTGCGGCAAGCAGTTCAGCCAACTGCGCAATTACAAGTATCACAGGTCCGTACACGAGGGCACCAGAGAGTTCTCTGGCAGTTGCCCAGAGTGCGGTAAGCTGTTCAACGACCGCGGTTACCTGAGTTCGCACATGAAGATCCACCGGAACCGAAAGGAGTACGAGTGCGAGTACTGTACGAAGAGCTTTAACCAGCGGGTGGCGTACAACATGCACGTGCGCATACACACGGGTGAGAAGCCGCACAGTTGCCACCACTGCGGCAAATCGTTCACCAGGAAAATGTTGCTCAAACAGCACCTGCGGATACACACCGGCGAGAAGCCGTTCTCATGTACCGTTTGCCACAAGCCTTTCGCCGACCGGTCCAACATGACGCTGCACATGCGCCTACACTCGGGCGTCAAGCCGTACGCGTGCGCCGTGTGCGCCAAGTCGTTCACCAAAAAACACCACTTGAAGACGCACATGAACTACCACACAGGCGTCAAGCCGTACTCATGCGACAAGTGCGGGCTGAGCTTCAGCCAGAGCAGCAACATGAGGACACACCTGAAAAAGTGCAGTGCTGTCGCAACACCGCAGCCGACGCCACCATTACCGGCGCCGCTGCAAGCCGCCGTCGCAGTGGTATCACCGGCCGCGCAACCCGTCTAA
Protein Sequence: MGDAKCDNHENRLMFSLQQMMNSEHFADVVICCSDGYKLRAHKVVLAYCSSYLQTLFLDHPGPDDSVTIILQDVGHEDVGRVLEFVYTGTAVVPGHRMDGFVTAAGALGIGPLLDPRRHLEMFSVQPPAPHHHPCPPTTVVNDPTPLTTTPPQQQHPYCRVRQPPRTTGILTPSPWAQNSRPPCATPRYSTPKTVQPDSLVIPVHPPTSNPIQVTEIQRGPLPIPLPPTPPEEPSIVSIPPSPSTDSDRDTKLKVTSDANNNGIPEKDRNANQTKSHVCQECGKTFVTKASLKIHQRTHTGEKPFVCESCGKQFSQLRNYKYHRSVHEGTREFSGSCPECGKLFNDRGYLSSHMKIHRNRKEYECEYCTKSFNQRVAYNMHVRIHTGEKPHSCHHCGKSFTRKMLLKQHLRIHTGEKPFSCTVCHKPFADRSNMTLHMRLHSGVKPYACAVCAKSFTKKHHLKTHMNYHTGVKPYSCDKCGLSFSQSSNMRTHLKKCSAVATPQPTPPLPAPLQAAVAVVSPAAQPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01038668;
90% Identity: iTF_00973178;
80% Identity: iTF_01304987;