Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: -
Assembly: GCA_036289425.1
Location: JAZAQC010000014.1:6490717-6495171[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.7e-06 0.00093 20.0 5.0 1 23 152 174 152 174 0.97

2 10 1.1e-05 0.0014 19.5 5.1 1 23 180 202 180 202 0.98

3 10 0.00036 0.043 14.8 7.9 1 23 228 250 228 250 0.96

4 10 1e-07 1.3e-05 25.9 1.9 1 23 256 278 256 278 0.98

5 10 2.9e-06 0.00035 21.3 6.6 1 23 284 306 284 306 0.98

6 10 0.00068 0.082 13.9 10.9 1 23 312 334 312 334 0.98

7 10 1.4e-06 0.00017 22.3 7.0 1 23 340 362 340 362 0.96

8 10 0.0014 0.17 12.9 0.1 1 23 368 390 368 390 0.97

9 10 5.3e-06 0.00064 20.5 0.9 1 23 396 418 396 418 0.98

10 10 6e-05 0.0072 17.2 2.3 1 23 428 450 428 450 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.7e-06	0.00093	20.0	5.0	1	23	152	174	152	174	0.97
2	10	1.1e-05	0.0014	19.5	5.1	1	23	180	202	180	202	0.98
3	10	0.00036	0.043	14.8	7.9	1	23	228	250	228	250	0.96
4	10	1e-07	1.3e-05	25.9	1.9	1	23	256	278	256	278	0.98
5	10	2.9e-06	0.00035	21.3	6.6	1	23	284	306	284	306	0.98
6	10	0.00068	0.082	13.9	10.9	1	23	312	334	312	334	0.98
7	10	1.4e-06	0.00017	22.3	7.0	1	23	340	362	340	362	0.96
8	10	0.0014	0.17	12.9	0.1	1	23	368	390	368	390	0.97
9	10	5.3e-06	0.00064	20.5	0.9	1	23	396	418	396	418	0.98
10	10	6e-05	0.0072	17.2	2.3	1	23	428	450	428	450	0.99

Sequence Information

Coding Sequence: ATGACTGAAGTGCTGAAAGCTAGTGAATTAAGGGTTCCGATGCCACCAGAAAATATGAGCATAAATAGAGATCGAAGCGGAGAACATCATCAAAATATGGATGGTCCACCACAGCCTGCACATGCTCATTTCACACCTCCAACTTCAGTGTCTGATTTAGAATTACTGCAGCATAGAGTCAATTGGGGTACATTCAGTGATCCTACAAAAGTATGCTCCAGTCTTATGCTTCAACTTGGAGGAGCTGCAGCTGCTGTTGGTTCAGGTCAAGGAGGTTCGTCTGGTAATAATCAAGCAAATGGTAATAATGAACGCCGTACACACATCACAGGCTCTAGTCTCATGTTACAATTGGGAGGAGCAGCGGTAGCAACTGCGCCGAGTAGCGCATCAGGCGGTACCCAAATATCGGGTTCAAGTGGTGAACGCAGAACCCATATCACGGATTCACCATTTCATTGTGACATATGTGGAAAATATTTCTCCAGAAAAGATCATTTCAAAAATCATGTAATGTGGCACACAGGTGAAACGCCACATAGATGTGACTATTGCGCCAAAACATTTACACGCAAAGAACATTTGGTTAATCATGTGAGACAACATACtgGTGGTATACAAAACGCTGCCGAATATTCTATGAACATGGAGCCTGGTCCTTCTACTTATCGTGAAACTCCTCACCACTGCAATTACTGCCCAAAATCGTTCACGCGTAAAGATCACATGGTTTACCACGAGCGTCAACACACAGGAGAAACGCCGTTCCCGTGCCAGTACTGTCCGAAGGCGTTCACACGCAAGGACCATTTGGTGAACCACGTCAGACGTCATACAGGCGAGTCACCACACAAATGCACTTATTGTTTAAAAGTGTTTACGAGAAAGGAGCATCTGACCAATCACATCCGCCAACATACGGGTGAGTCACCACACCGATGTCACTTTTGTCCTAAAACCTTCACGCGTAAAGAACACCTTACTTGTCATATTCGTATTCATACAGGCGAATCTCCACATGCTTGTGAATTCTGTAATCGTACTTTTACGCGTAAAGAACATTTAAAGCGCCACATGCGCCAGCATATTCCCGGTTCTGAGTATAATTGTCTTATATGCGATGAAACTATGCCCACCAAAGAGCAATTGCTTGAACATATGGCATCCCACCCACAAGATTACCCTTATGTATGCACAGATTGTGGGAAATCATTCAGGCTTAAAGGAAATCTTTTATTTCACTTACGTTCCCACCAAAAAGGTATGCCTATGGATCGACCATTTCAGTGTGATCTGTGTCCTAAGGATTTCATGTTTAAAGGCCATCTAGTTTCACATCGCCGTAGCCATACAAACCCAAAAGTTCAAACTTCATTCCCAGCcacaattcaaataattggaaataattcatttgtTATTAAGAATGGTAAAGAAGAAGGAGAATTAGTTAATATACATCAATTAACTAATCAAGCAGAACGATCCATACAATATGATATGTCTCATAGGCgtaatacagaaaaaaattctCATTTCCCTGCTACTATTCAGATTAGTAATGGTTCATTTGTACTCAAAGGTTTGGTAAAACAAGAAGGTGATGGACCTGAATTAATAACTTTACATCAACAACAGCAAGATGGGACTAGCATTCAGTCTGCTCAGTTAGTTAGTGTGGGAACGCAGGTTACTTTACCATCACCTCAGAATAACGAACACATAACTCCTCATTCTAGAGCTAGTTTACTAGCAGctgtaacataa
Protein Sequence: MTEVLKASELRVPMPPENMSINRDRSGEHHQNMDGPPQPAHAHFTPPTSVSDLELLQHRVNWGTFSDPTKVCSSLMLQLGGAAAAVGSGQGGSSGNNQANGNNERRTHITGSSLMLQLGGAAVATAPSSASGGTQISGSSGERRTHITDSPFHCDICGKYFSRKDHFKNHVMWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGGIQNAAEYSMNMEPGPSTYRETPHHCNYCPKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCLKVFTRKEHLTNHIRQHTGESPHRCHFCPKTFTRKEHLTCHIRIHTGESPHACEFCNRTFTRKEHLKRHMRQHIPGSEYNCLICDETMPTKEQLLEHMASHPQDYPYVCTDCGKSFRLKGNLLFHLRSHQKGMPMDRPFQCDLCPKDFMFKGHLVSHRRSHTNPKVQTSFPATIQIIGNNSFVIKNGKEEGELVNIHQLTNQAERSIQYDMSHRRNTEKNSHFPATIQISNGSFVLKGLVKQEGDGPELITLHQQQQDGTSIQSAQLVSVGTQVTLPSPQNNEHITPHSRASLLAAVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01499815;
90% Identity: iTF_00942090;
80% Identity: -