Rnym017275.2
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- gl
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000022.1:7177391-7181291[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.9e-05 0.035 14.6 1.7 19 41 236 255 234 257 0.91 2 5 0.14 1.7e+02 2.8 0.1 18 41 263 283 258 285 0.82 3 5 0.0028 3.4 8.2 1.9 5 38 279 312 275 312 0.80 4 5 0.00013 0.16 12.5 0.7 18 40 319 338 315 341 0.89 5 5 0.46 5.5e+02 1.2 3.1 6 40 336 366 335 368 0.78
Sequence Information
- Coding Sequence
- ATGGCCGATGTATTAATGTCTCTCAAACACACCGTGCCAACTCCACAATCCTCAGTAGACGAACAACATCAACAGCATGACCAAGCGTATGGACTGTCTGCCAATCACAACGACGATTCACAACCGCTGGTCGACTATGGCGGTTCATCATATGGCGATCAGACGTGCTGGACCACGCTCGGTGGCGGCCACCAGCAGCAACAAGTCCAACAACACCAATTCCCCAGCATGAGCGTTAACGTCAGCATGAACATGACTATGCACGGGTACGCTCCGATACACGGGGACGCTCAGTTCGGATGTCAAccgGTCGGGTGGACTCTGCCGGCGTCACCGTCACCAGTGCATcatcaccaccaccaccatcaCGGGTCCGTGCACCACCACCAAGGTCTGTTGAGTCCATTGGTGTCTATGGGTACCGGCGGTTACCAGTCGGGTGCCACGTATTCGTTCACCGCCGATTTCCGGCCACAGGACCCGATATCATCGCAACTACCACCGCCGCCGTTCGCGTGCAACATACAACCGGCTGCGCCGGCAcagtcgtcgtcatcgtctgCGGCGATGATCGACGACGATTGCAAGGACCTGAAACCATGCGCCGAAATCCTGATGTCGGTAAGCGGCTGCGGCATGGGCGGCGCCGAGTGTTCTCCCGTCGGGTCAGCGACTATTGGCGAAGATGGCTGTCGGCCGAACATGTGCCGGATATGCGGCAAGACGTACGCCCGTCCCAGCACGCTCAAGACCCACCTGCGCACGCACTCTGGTGAAAAACCGTATCGGTGCGACGATTGTAACAAGTCGTTCAGCCAGGCGGCGAACCTGACGGCGCACGTGCGCACACACTCCGGCGAAAAGCCGTTCCGGTGCCAGATATGCGATCGGCGGTTCTCGCAGTCGTCATCCGTCACGACCCACATGCGAACACACTCGGGCGAGCGGCCGTACCGGTGCCGGCTGTGCAAGAAAGCGTTCAGCGACTCGTCCACGCTCACCAAACACCTGCGGATACATTCGGGCGAAAAACCATACCAGTGCAAGCTGTGTCTACTCCGGTTCTCGCAATCCGGAAATTTGAACAGGCACATGCGCGTCCACAGTGGCATGAACGGCGCCGACATTTTGTTGCCTGTATAA
- Protein Sequence
- MADVLMSLKHTVPTPQSSVDEQHQQHDQAYGLSANHNDDSQPLVDYGGSSYGDQTCWTTLGGGHQQQQVQQHQFPSMSVNVSMNMTMHGYAPIHGDAQFGCQPVGWTLPASPSPVHHHHHHHHGSVHHHQGLLSPLVSMGTGGYQSGATYSFTADFRPQDPISSQLPPPPFACNIQPAAPAQSSSSSAAMIDDDCKDLKPCAEILMSVSGCGMGGAECSPVGSATIGEDGCRPNMCRICGKTYARPSTLKTHLRTHSGEKPYRCDDCNKSFSQAANLTAHVRTHSGEKPFRCQICDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHSGMNGADILLPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00942143;
- 90% Identity
- iTF_01304380;
- 80% Identity
- -