Rnym013423.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- mybA
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000016.1:7252397-7255603[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0028 3 8.5 0.0 22 44 137 158 122 160 0.88 2 5 4.3e-13 4.6e-10 39.9 1.2 1 46 166 213 166 213 0.97 3 5 4.2e-08 4.4e-05 24.0 0.4 1 44 219 268 219 270 0.92 4 5 0.15 1.6e+02 3.0 0.0 23 44 297 318 280 320 0.80 5 5 2e-12 2.1e-09 37.8 0.0 1 43 328 373 328 375 0.94
Sequence Information
- Coding Sequence
- atggACGCATGCGGTAACCCAATTCCTGGACCATCAAaagaatttgtaaatatagaaaCTACTGAATCTGCTTATGACTTTACATGGTTGGAAAATGAGTTCAACAATGATGATGCTAATGAAGATTTAAAAGCTCCAACAAAAGAATGTGTTGAAAGAAATCAATGGAACCaagagtttaaaaataaattagaaaaagcAATACATGCTGAAGTATTGAACAAACTAAAAATTCCTATGCTTGAACAGCACTTGCGTCTTGGTATAGATCGACACAAACAAGTTGATCCAATTATGaaacataaaattgaaattgaaatgttAGATCTAGAAAAAGAATTAGATATTGTATCTAAAACACCATTTAAGCAATTAGTCCTTCAGTTTATGGACTCAGATGCAAAGTATGATTGGTTACATATTGCAAAAGAAGTTGATAAACCGGATTTACAATGTCAAAGGTtttggaatttaattttaaaacctcATATATCTAGAGATAGATGGACTAAAAGCGAGGATGACCGTTTAATTCAAATTGTTgcaaaaaatgaagaaaaaaattggcAAAAAATAGCTGATGAATTAGCTACTAACCGTAATGAGTTACAATGTTTTGttcattatcaaaaatataagaaaatgttACATACAAAAGGTAAATGGTCAAAACAAGAAGATCAGAaacttatagatataattaaagaaaattctACAGATAATATCATCAATTGGCAAAGAGTATATTTTGCTATGCAAGATAATAAGAGAACTGTTGATCAAATCTATGGCAGATGGATGCAAAGTTTAAAACCAGGCATTAAAAAAGGGTTTTTAACTGAGAgtgaaaaatttattattaaagaagctaaaatcaaaaatttaccTCCATCAATagtatcaatgaatttaactAATCGAACATCTGCACAAGTTCGTAATGCTTATcgtagaattatattatatgatgaagATATTTATAGAGGTGGTTGGACAGCTGAAGaagataaaatgttaataattgctGTAAATTCCTATGCACCTAATGAATTTACTTGGACACAAGTATCTCAACAGGTACCTGGGCGTAATGGAGAACAGTGTCGCCATAGattcaaattaattgaaaaaaaattaaaacttaacccAAAATTGACTGTTGAAGATATTCCACGCCCAATCCGATGTTATAGATCAAAATTATCCTTTTTTCCAGAAGATGAATTAAATGGAGATTTACAggaaaaatttaaacacaatCGCAAATTGCTTAAAACATCTAATGTACCATCAGAAACAAATGCTGATCGTAAGTTGAAGAAAGCTTACTTGGAAAATAAGTTTGTTATTAACAATTGCAATTTGTCTAGTAAATGTGATCTTTACAGACATGTACTTGATTATTTGGGAGCTAATTTGGTTGTACCTAAAACTTTTGCCCATAAAGATGATTTGGTTGATGATGGACTTATAAGTATGATGACTTATCTATCAGAGTGTTCCATTGATACAATGGCATTAGATCCCAATAATGTTGAGCACGATTTGTATGACCCACTATTGATCCATGAAGGAGTTCACAATGTTTTAAGAACAAGTGATATTATCAATTCTGATCTGAGTGAAATAGAAgcaaacataaatataatcgtAAATACTGAAGAAGTTAATAAAGAAGAGATAAAAATAGAACCATCttcaaattattctaaaattactaaaaatacgagtacatactctaaaaataaaaagtataatttcaatttaaaaaatattttatga
- Protein Sequence
- MDACGNPIPGPSKEFVNIETTESAYDFTWLENEFNNDDANEDLKAPTKECVERNQWNQEFKNKLEKAIHAEVLNKLKIPMLEQHLRLGIDRHKQVDPIMKHKIEIEMLDLEKELDIVSKTPFKQLVLQFMDSDAKYDWLHIAKEVDKPDLQCQRFWNLILKPHISRDRWTKSEDDRLIQIVAKNEEKNWQKIADELATNRNELQCFVHYQKYKKMLHTKGKWSKQEDQKLIDIIKENSTDNIINWQRVYFAMQDNKRTVDQIYGRWMQSLKPGIKKGFLTESEKFIIKEAKIKNLPPSIVSMNLTNRTSAQVRNAYRRIILYDEDIYRGGWTAEEDKMLIIAVNSYAPNEFTWTQVSQQVPGRNGEQCRHRFKLIEKKLKLNPKLTVEDIPRPIRCYRSKLSFFPEDELNGDLQEKFKHNRKLLKTSNVPSETNADRKLKKAYLENKFVINNCNLSSKCDLYRHVLDYLGANLVVPKTFAHKDDLVDDGLISMMTYLSECSIDTMALDPNNVEHDLYDPLLIHEGVHNVLRTSDIINSDLSEIEANINIIVNTEEVNKEEIKIEPSSNYSKITKNTSTYSKNKKYNFNLKNIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -