Rnym017861.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- bab2
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000025.1:1060051-1065600[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-17 2.8e-14 53.0 0.0 3 44 252 294 250 295 0.95
Sequence Information
- Coding Sequence
- ATGGCTGATCAGAGGTTCTGTTTGCGGTGGAACAACCACCAGCCAAATCTGGTGAACGTCATGACGGGCCTGTTGAACAGTGAGATGTTCGTGGACGCCACTATCGCTGCCGAGGGCCGGAAAATACAAGTGCACAAAGTCGTGTTGTCTGCGTGCAGCAGCTATTTTCAAATGCTTTTCAATGAAACACCTTGTCAACATCCAATAATCATCATCAAAGATATGtcatataatcatttgaaaacattaatagaGTTTATGTATTATGGCGAAGTTAACATTTCTCAAGATCAACtcccaattattttaaaagcAGCGGAAAGCTTACAAATAAAAGGGTTGACTGAGAAAACTATGTTTCCTTTTGCTACAACACGACACGCAGAAActgaatatagtttattgtcGCCTTCtgcaaaacgaaaaaaaatgcatCTCATGAAAACATCCAGTGATAAATCTGAACACAATAGTTCTATCGAAGATATTTCAGTAACCGAACAAGATAATATGTCAActagatCTCAACCTACATCACAAGGACAAGAAACATCAAAACCTATTAGTGTAAGCAAACAATCATCTACAGATAACCATACAACAATAGTTCACCACAAACCTGAAGGTTGGTCGTTTTTGGAGCAGCTCTCTGATTGCCCGCCTCACAGTGTCTACGCCATACCCAAAGCCAAAGCAGTATCCAAACCAGAAAATAAAGTACGCAAAAAACGAGAACCTGGTATACGGGAGAGTGATCGTTTTAAAGAAGCTCTTGAAGCTGTACGTGTGGGCCGTATGGGATTTTGTCGTGCTGCTCAAGAGTATGGGATAAATAACCGTACATTGTGGCTcgagtacaaaaaaaaaggttatccCGTTCATCGAAAAGGTCAGTCTTCCTCATCTATTCCAGTCCCCTCGCCAGCATCATCAATTAATGGTCAATCATCCGAGCAAGTGTATCAAGCGCCACTATATGAACCTTCAACATCTCAAACTTCGGCAGTTGATCATCCTGCTTATGTTTCACAAATGACTCTAGTACGTCAACcccatataaaaatcaatgataGTGACATGAGTACAGATACATCTATGGTTAAAAGCGAAACAAGTGATGAGTCTGAACCTATTATCCGGGTGCTCGAGAGGCAGTGTTCAGAGCCAAATCCATCATCGACCAACACACTAGCTGTTCCTAAACCAATCATAGTCAAACAAATTTCTCAGCCATCTGAACCCAGTTCAACAGCTAGAACTTTCTACAATGATGAACTGCCTACTAGTGTCTCTCAGGTAAACACAAATGATTCTTATAATGGATCAACTCGATCTGACCATTGTCCATTGTTGCGTTCTGGACCAGCACTTGGATGCAGTTTCTGTTGGAACACGATAGACACCCGTGGAAGGTTCTTGAGACGTAAAACTAAATATCACTGCCCTGAATGCAATATAAATCTTTGTCTGGTTCCTTGTTTTCagGAATTTCAcgaaaaacaaattcaaacaAAATCTACTGATATTCCTACAACAGATCAGCCTCGGAATCAAAAGGTGACAGAAGACACAGCAGTATAA
- Protein Sequence
- MADQRFCLRWNNHQPNLVNVMTGLLNSEMFVDATIAAEGRKIQVHKVVLSACSSYFQMLFNETPCQHPIIIIKDMSYNHLKTLIEFMYYGEVNISQDQLPIILKAAESLQIKGLTEKTMFPFATTRHAETEYSLLSPSAKRKKMHLMKTSSDKSEHNSSIEDISVTEQDNMSTRSQPTSQGQETSKPISVSKQSSTDNHTTIVHHKPEGWSFLEQLSDCPPHSVYAIPKAKAVSKPENKVRKKREPGIRESDRFKEALEAVRVGRMGFCRAAQEYGINNRTLWLEYKKKGYPVHRKGQSSSSIPVPSPASSINGQSSEQVYQAPLYEPSTSQTSAVDHPAYVSQMTLVRQPHIKINDSDMSTDTSMVKSETSDESEPIIRVLERQCSEPNPSSTNTLAVPKPIIVKQISQPSEPSSTARTFYNDELPTSVSQVNTNDSYNGSTRSDHCPLLRSGPALGCSFCWNTIDTRGRFLRRKTKYHCPECNINLCLVPCFQEFHEKQIQTKSTDIPTTDQPRNQKVTEDTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134638;
- 90% Identity
- iTF_00134638;
- 80% Identity
- iTF_01304957;