Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: lov
Assembly: GCA_036289425.1
Location: JAZAQC010000012.1:4322964-4329305[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3.2e-18 5.9e-15 55.2 0.0 1 44 544 587 544 588 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3.2e-18	5.9e-15	55.2	0.0	1	44	544	587	544	588	0.96

Sequence Information

Coding Sequence: ATGGACACGCCACAGTACAGCCTTCGGTGGAACAATCACCTGGTCCACATGATGGACGCCATCGAAGTACTCCTACAAAACGAAACTCTCGTGGACGTCACGTTGGTTTGTGAAAAGACTCAGTTTAAAGCCCACAAAGTCGTCTTATCCGCTTGCAGtccatattttcaaaggCTATTCTCTGAAACCCCGTGCAAACATCCCGTGATCGTGCTTAAGGACCTTCCCGACTGGGAGATGAGAGCTATCATACATTTCATGTACAAAGGGGAGATTAACGTTGGCCAAGAACAGTTGCCGTTGTTGCTACAGGCTGCTGAAACGCTACAAATCCGCGGACTGGCCCACACCGAGCGCATTCCGTTGTTCGTCGATTCGCCCACTTCGTCGTCGACGACGCCCACGGACGTCCAACCACCACCGtcgcaacagcaacagcagccaCCGCTTCCGTCGTCTCACCATCACGGCTCGAGCGGTCATCATCACCATCACCATCACCACTCCAGCCGGGGCCACAGTCCCGGTGGCAAATCCGGCTCGACCGCCGGCCACGAGCTGATGAACGGACAGAGTTCACCGGGCAAAGGTCACCATCACCACCATCACCACCACAGGCACCGGACCGCCGACTCGCCGCAGAGTCCGCGCAACAAGTCAcagccaccgccgccgcacCACGCGCTCGCGCtcccgccgccgccaccgccgcacCACCGCGACGGATCCGCCGGCCGCATGTCGCCGACCACCAGGATGTTCTTCCAAGCCGCCGCGGCCGCTGCGGCCGCCGCTGCAGCCAATCCGTACGATCCTTCGCACATCCGCCTGCCACAAATACAGCACATGCCGCCCATTACGTTCAACGACAGGAATTGTCCGTCGCCGACACCTCGCAGGAAACAGGCTAGACCCAGGCGAAGATCAGGCGAAGCGATTGGTCCACAAGATTTGAGCAAAGCACCTTCTCCGTCAAACTTCAATAACAATGTCGCAGAAAATTTGTCGATGAAAAAATCACCAAACAATGAAAATGTCAATAACGAAAACATGCCGACAAATTTAAGTTGTAACAATAAAAGGCCGGATAGGACACCGTCACCGTCGACAAAACAAATGAAGGTTGAAGTAGAAGAATCAGAAATGATTGGAGACTTGGGACAAAGTCTGCCGGTAGAGTTGACTGCCAACAGTGGCAACCCAAacgtaaacaataataacaataataataataaccagtCGAGTAACAAAAAGAACCACCACCATCACCACCATCACCATCTCAACCACCAACAACAACATCAGAGGCATCCGGATTTCCCTTATTACGGACCGGATCCCATGAGCATACCACTTAATCCACACgatcCGCACTTTGAGAACTCGTTGTTTCCTCCTTTTGGACCGTTGTCATCGCTATCTCTACAAGGACCTCCTCACaTGTTTCCAATAGATGCCCAGTTTGGTTTATTTCCCGGTTTGGACGGCTGCAGGAACCCACTGTTAAACGAACTGATCGAACCAAGGTTTGACAATCCACCGCCAAGTAAAAAGAaaaAGAAAATGTTCCCGGTCGGACGTCCCAAAGGCCAGCACAGCGCTCCGCGCGGAGGTCCACCTAGGTCGTGGACGAACGCCGAACTCACAGAAGCGTTGCAGCACGTTTGGAATAAGAAGATGACTACGTCGCAGGCTTCCAGGATCTTTGGTATACCGTACAACAGTCTGCTCATGTACGTGCGTGGCAAGTACGGCAAATCATTAAAACTAGAACAGTTGAAAAAAGAGTGTTTCGGCGACATAAACGGTCCGCTGGACTTGTTGCACTTCGGATCCATATcgaacaacaacaacagtAGCAACAagaacaataacaacaacaacaatagcagcaacagcaacaacaacaacagcagcGGCGGCAACAACGGCCAGTCAAACGGTACCGGTAACAACAACAACGGACCGACACTGCAGCCATGCACTACGCCGTCGGAACCCGTCGACCTGATGTTGGGCCCTCCCGGATTCAACCCACCCGCGTTCCCGGCACCCAACTTCTTCCCGGACTTCGGGTCCACGTTCCCGATGGGCATAGACATGATACACCTGATGCaccagcaacagcagcagatGTCGTCGTTGTCGGCGGCCGACAAACACCAGTACTTAGGACTGCAAGACATGATCAGCGGTCAGCCGCTGCAGTCGTCTGTCGTGCTGGACTACGCGATGAAGTCTCCGGCTGCCAGTCGCAGCAACTCGGAACCACCGACGACGGGCGGCGAGGGCGACGGAGACGGCGACGGCGATGGTGAGGGCGACGGTGActgcgacgacgacgacggagCCGACGATTGCGGTGTCGACGATGAGGAAGAGGACGATGATGACGACGACGTGGTGGCCATGGACTTCTCCAAGGCCGGTGACATTGGCGGCGGTGACGTTGCTAGCGGTGACGCTGCCGGCGGCAGCGTTGGCGGTGGTGCCGGTGCCGGTGACGAGGACGATGGGGTCGACGACGAGgaggacgacgacgacgacgacgaaagACTGAGTCCGGAAGCGGATGACAAGGATAAGGAGCAAGACTGA
Protein Sequence: MDTPQYSLRWNNHLVHMMDAIEVLLQNETLVDVTLVCEKTQFKAHKVVLSACSPYFQRLFSETPCKHPVIVLKDLPDWEMRAIIHFMYKGEINVGQEQLPLLLQAAETLQIRGLAHTERIPLFVDSPTSSSTTPTDVQPPPSQQQQQPPLPSSHHHGSSGHHHHHHHHSSRGHSPGGKSGSTAGHELMNGQSSPGKGHHHHHHHHRHRTADSPQSPRNKSQPPPPHHALALPPPPPPHHRDGSAGRMSPTTRMFFQAAAAAAAAAAANPYDPSHIRLPQIQHMPPITFNDRNCPSPTPRRKQARPRRRSGEAIGPQDLSKAPSPSNFNNNVAENLSMKKSPNNENVNNENMPTNLSCNNKRPDRTPSPSTKQMKVEVEESEMIGDLGQSLPVELTANSGNPNVNNNNNNNNNQSSNKKNHHHHHHHHLNHQQQHQRHPDFPYYGPDPMSIPLNPHDPHFENSLFPPFGPLSSLSLQGPPHMFPIDAQFGLFPGLDGCRNPLLNELIEPRFDNPPPSKKKKKMFPVGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKECFGDINGPLDLLHFGSISNNNNSSNKNNNNNNNSSNSNNNNSSGGNNGQSNGTGNNNNGPTLQPCTTPSEPVDLMLGPPGFNPPAFPAPNFFPDFGSTFPMGIDMIHLMHQQQQQMSSLSAADKHQYLGLQDMISGQPLQSSVVLDYAMKSPAASRSNSEPPTTGGEGDGDGDGDGEGDGDCDDDDGADDCGVDDEEEDDDDDDVVAMDFSKAGDIGGGDVASGDAAGGSVGGGAGAGDEDDGVDDEEDDDDDDERLSPEADDKDKEQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00940283;
90% Identity: iTF_00940283;
80% Identity: iTF_01304970;