Rnym017515.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- kn
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000023.1:1134438-1157457[+]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-96 9.8e-92 308.6 0.1 8 182 36 205 29 205 0.95
Sequence Information
- Coding Sequence
- ATGTTCGGCCTGCACCACCACCATCACCAGGACACCGCAACGCCCGGTGGTATATCCGGACTGCACCATCATCATCACCATCACCACCATCACCAGCTCCGGGGCCCAGTTACCGGGCTCAAAGAAGAACCTTTGGCCAACTCGCAGCTATCCGTTCCCCGTTCATGGATGCAACCTTCTATCATCGATCAGAGCAGtaTCGGCGTGGGAAGAGCACATTTTGAGAAGCAACCTCCCAGCAACCTGAGAAAATCCAATTTCTTTCATTTCGTGATCGCGCTGTACGATAGGTCTCAACAGCCAATCGAAATCGAACGAACTGCGTTTATCGGATTCATCGAAAAAGATCAGGAATCCGAGTCACAGAAGACCAACAACGGTATTCAGTATAGACTTCAGCTGTTGTATGCTAACGgtgtGCGACAAGAACAAGACATATATGTGAGGCTCATTGATACTGTTACCAAACAGGCCATCATTTACGAGGGTCAAGACAAGAATCCTGAGATGTGCCGGGTGCTGCTAACGCATGAAGTCATGTGCAGTCGATGCTGTGATAAGAAAAGTTGCGGCAACAGAAACGAAACGCCATCCGATCCGGTCATCATCGACAGGTaa
- Protein Sequence
- MFGLHHHHHQDTATPGGISGLHHHHHHHHHHQLRGPVTGLKEEPLANSQLSVPRSWMQPSIIDQSSIGVGRAHFEKQPPSNLRKSNFFHFVIALYDRSQQPIEIERTAFIGFIEKDQESESQKTNNGIQYRLQLLYANGVRQEQDIYVRLIDTVTKQAIIYEGQDKNPEMCRVLLTHEVMCSRCCDKKSCGNRNETPSDPVIIDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169645;
- 90% Identity
- iTF_01169645;
- 80% Identity
- -